Equus caballus (horse): 106780826
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Entry
106780826 CDS
T01058
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecb04131
]
106780826 (VPS13A)
Membrane trafficking [BR:
ecb04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106780826 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Mannitol_dh
Motif
Other DBs
NCBI-GeneID:
106780826
NCBI-ProteinID:
XP_023482948
Ensembl:
ENSECAG00000020865
VGNC:
24914
LinkDB
All DBs
Position
23:complement(13570859..13804300)
Genome browser
AA seq
3169 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLTLGIWGGAVALKNLEIKENALSQLDVPFKIKVG
HIGILNLVIPWKNLYTQPVEAVLEDIYLLIVPSSKIKYDALKEEKQLLEAKQRELNRIEE
AKQKVADQEKERVEKQDTFTEKLITQIIKNLQVKISSIHVRYEDDITNRDKPLSFGISLQ
NLSMQTTDQYWVPDLHDETEKLFRKLIRLDNLFAYWNVESQMFYLNDYEESLGSLKSGIV
HENIVPEGYDFVFRPISAVAKLQMNRRSDFDFSAPKINLDVELHDIAIEFNKPQYFSVME
LLESVDMMTQNLPYRKFKPDVPLQHHAREWWAYAIYGILEVNVSPRLRMWSWKHIREHRQ
KMKQYKELYKKKLINKKPSGELLVTLEELEKTLDVFNITISRQQAEVEVKKAGYRIYREG
AKDSEENKGWFSWLWTWSESNTKEQPDVKPGILEEMLTPEEKALLYEAIGYSETAVDPTL
PKTFEAMKFFVHLKSMSIVLREKQEKPELLDIVVEEFSTYIVQRPGAQAIKFETKIDSFH
VTGLPDNSSKPRLLSSLDDATSLFQITFEINPLDETVAQRCIIEAEPLEMIYDARTVNSI
VEFFRPPKDVHLAQLTSATLTKLEEFREKTATGLMYIIETQKVLDLKINLKASYVIIPQD
GIFSPTSNLLLLDLGHLKVTSKTRSELLDMKQGGAKLEEIMHRAYDSFDVQLTSIQLLYS
RAGDNWKEARKLNVSAQHILIPMHFNVELSKAMVFMDIRMPKFKIFGKLPLISLRISDKK
LQGILELVESIPKPKPATEVHGPAKSFQMQRSVSLGTSQISQKMFPLLEIPCVEDDSEEE
FFDAPCSPLEEPLQPPTTVKSYQQKKLPKTACSKNMTQYKIRFEVPEVLIQFCHLVGDCE
LPVVEIDVLGLGTEIELRTFDLKANAFLKEFCLKCPKYFDANEKPVYLITTLDNTMEDLL
TLEYVRAEKNVPNLKSTYNNVVQLIKVNFSSLDIHLHTEALLNTINYFNNILPQLEEKSA
SLYVAETEDKGEVIRKIPLKLPKNEDIITLQILAELSSIQIFIQNQKRNISEIKIEGLDS
ELIMRPSVTEINAKLRNIVVLDSDITAVYKKAVYITGKEVFSFKMISYMDATAGSAYTDM
NVVDVQVNLTVGCIEVVFVTKFLYSILAFIDNFQEAKQALTEATVQAAGMAATGVKELAQ
RSSRMALDVNIKAPVVVIPQSPVSENVFVADFGLITMTNTFHMITESQSNPPPIIDLITI
KLSEMRLYRTQFINDAYQEVLDLLLPLNLEVIVERNLSWEWYQEVPCFNVNAQLKPMEFI
LSQEDLTTIFKTLYGNIWYEEGDSASPVGVKDQHTVASGVSSSHSGGTTVVTAAVVEVHS
RASQIKTTLNMSFKTDYLTMVLYSPGPEQTSFRDVRDPSLKLAEFKLENIISTLKMYSDD
STSSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDVRYRRVRDGWVTDLVLQET
YICASVEFLLTVANVFLEAYTTGTAVETSVQTWTAKEEVPIQESVKWEINIIIKNPEIVF
VADMTRNDAPALVITTQCEICWLGDLENNTMTAAIKDLQVRACPFLPVKRKGKITTVLQP
CDLFYQSTQTGTDPQVIDVSVKSLTLKVSPVIINTVITITSALYTTKETIPQETASSTAH
LWEKKDTKSLKMWFLEEPNEVENIAPTTELVPKGEMIRMNIDSIFIVLEAGVGHRTVPML
LAKSRFSGEGKNWSTLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGIK
MKKKAKKAIVESDTEEENYKVPEYKTVISFHSKDQLNITLSKCGLIMLNNLVKAFTEAAT
RPSAVFVRDLAPFLILNSLGLTITVSPSDSFSVLNVPMAKSYVLKNEESLSMDYFGTKDN
DHFNAMTSLSSKLFFILLTPANHSATDKIPLTKVGRRLYTVRHRESGVERSIVCQIDGEE
GSKKITIRSPVQIRNHFSIPISVYGRDTLLGTASPGNEFNIPLAFYRSLLFLKPEDEDYQ
MCEGIDFEEIIKNDGTCLKKKCRPKTSSKKPFIINIVPEKDNLTSLSVYSEDGWDLPYIM
HLWPPVLLQNLLPYKIAYYVEGIEHRVSTLNEGHSAQICTVQLDKAKLHLKLLDYLNHDW
KSEYHIKSNQQDISFINFTCVTELEKTDLDIAVHVTYNTGQTVVAFHSPYWMVNKTGRML
QYKADGIHRKHPPNYKKPVLFSFQPKHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAVKC
KGLKMEYQVGVTIYLSSFNITRIVTFTPFYMIENKSKYRISVAEEGNDKWFSLDVEQCIP
FWPEDASNKLLIQVEKNEGPPKKIHFKKQENCILLRLDNKLGGIIAEVNLAENSTVIKFL
DYHDGAATFLLINHTKNDIVQYMQSSLSEVEDSLPPGKAVFYTWADPVGSRKLKWICGKS
HGEVTQKDDMMTPINLGKKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAEQEIV
LALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSVKHTEKLEREFKEYA
ESSPSEDKVIELDTNIPVRFTPTGTNMKILQPHVIAIRRNYLPALKVEYSTSAHQSSFRI
QIYRIQIQNQIHGAVFPFVFYPIKPPKSITMDSAPKPFTDVSIVMRSAGHSQISRIKYFK
VLIQEMDLRLDLGFVYALAELMTEAEVTEKTEIELFHKDIEAFQEEYKTVSSVDSSQVSL
YEYFHISPIKLHLSVSLSSGKEAKDSEQHGGLLAVHSLNLLLKSIGATLTNVQDVVFKLA
FFELNYQFHTTSELQSEVIRHYSKQAIKQMYVLILGLEVLGNPFGLIREFSEGVEAFFYE
PYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASRITSAMAKGVAAMTMDEDYQQKRR
EAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAV
ARPTGGIIDMASSTFQGIKRATETSDEVASLRPPRFFNEDGVIRPYRLRDGTGNQMLQVI
ENGRFAKYKYFTHVMINKTDMLMITKSGILFVTKGTFGQLTCEWQYSFDEFTKEPFIVHG
RRLRIEAKERVKSVFHSKEFGKIINFKTPEDARWILTKLEEAREPSPRL
NT seq
9510 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtcgtggacgtgttgaatcggttcttgggggattatgtggtg
aacttggacacgtcccagctcactctgggcatctggggaggagctgtggccttgaagaat
cttgaaattaaagaaaatgccctgagtcaacttgatgtgccatttaaaattaaagttggt
catataggtattcttaatcttgtaattccatggaaaaacctttatactcaaccagttgaa
gctgtattggaagacatttatttactcatagtgccttcttctaaaataaaatatgatgct
ttaaaagaagaaaaacaactcttagaagcaaagcaacgggaactaaatagaatagaagaa
gcaaaacaaaaagtagctgatcaagaaaaagaacgggtggagaaacaggacacttttaca
gaaaaattaattactcagatcataaaaaatcttcaagtgaaaatttccagcatccatgtt
cgttatgaagatgatatcacaaatcgggacaaaccactgtcatttggtatttcccttcaa
aatctcagcatgcagaccactgatcaatactgggttccagatttacatgatgaaactgag
aaactatttcgtaagttaatccgattggataacctttttgcctattggaatgtggagtct
cagatgttttatcttaatgattatgaggaatcattgggcagcttgaagagtggtattgtc
catgaaaatattgttccagaaggttatgattttgtatttcgccccatatctgctgttgct
aaacttcagatgaatcgcagatcggattttgacttttctgcccccaagataaatctggat
gttgagttacatgacatagcaattgaatttaataaaccgcagtatttcagtgttatggag
cttcttgaatcagttgatatgatgacacaaaatctgccatataggaaattcaaacctgat
gtacctctgcaacaccatgccagagaatggtgggcttatgctatctatggtattcttgaa
gtaaatgtttctccccgcttacggatgtggtcatggaagcatattagagaacacaggcaa
aaaatgaagcaatataaagaactgtataaaaaaaagctaataaataagaagccatctggt
gaacttcttgtcactttggaggagttggaaaagaccttggatgtatttaatataactata
tccagacaacaggcagaagttgaggtaaagaaagctggatacaggatttacagagaagga
gcaaaagattcagaggaaaataaaggatggtttagctggctgtggacttggtcagaatca
aatactaaagaacaaccagatgttaaacctggaattcttgaagaaatgttgacacctgaa
gaaaaagctttgctctatgaagcaattggctatagcgaaacagcggttgatccaaccttg
cccaaaacatttgaagccatgaagttttttgttcacttgaaaagtatgtcaattgttcta
agagaaaaacaagaaaagcctgagttgttagatattgtagtagaagaatttagcacttac
attgtgcagagaccaggagcacaagcaattaaatttgaaaccaaaatagattcatttcat
gttactggattgccagataattcatcaaaaccccgcctcctgtcttcattggatgatgct
acatcactcttccaaattacatttgagataaatccattagatgaaacagttgctcaaagg
tgtatcatagaagctgaacctttagaaatgatatatgatgcaagaactgtgaatagtata
gtggaattcttcagacctccgaaagacgtacatctagcacaactcacttcagcgactttg
acaaaacttgaagaatttcgagagaagacagcaacaggtctgatgtatattattgaaaca
cagaaagttcttgatctcaaaattaatttgaaggcttcatatgttattatcccacaagat
ggaatttttagccctacatcaaatctacttcttttggatcttggtcatctaaaggtgaca
agtaaaactcgatcagaattactggatatgaaacaaggtggggccaaacttgaagagata
atgcatagagcttatgattcctttgatgttcaactgacaagcatacagctgctttacagc
agagctggtgataattggaaagaagcacgaaaactcaatgtatctgcacagcatattttg
atacctatgcacttcaatgtggaactctctaaggccatggttttcatggatataagaatg
cccaaattcaagatttttggaaagttaccgctgatttctttacgaatctcagataaaaaa
ctgcaagggattttggaattggttgaaagcattccaaaacccaaacctgcaactgaagta
catggccctgccaaatcatttcagatgcaaagatccgtttctttgggaacatcacagatt
tcacagaaaatgtttcctctcttggaaattccatgtgttgaagatgattctgaggaagaa
ttttttgatgcaccgtgtagtcccttggaggagcctcttcaacctccaactacagtgaaa
agttatcaacagaaaaagcttccaaagacagcttgttcaaaaaatatgactcagtataaa
ataagatttgaagtgccagaggttttgattcagttttgtcaccttgttggagattgtgaa
ctgcctgtggtagaaattgatgtcttaggattgggcacagaaattgagcttagaacattt
gatttgaaagcaaatgcctttttgaaagagttctgcttaaaatgcccaaaatactttgat
gcaaatgagaaaccagtttatttgattacaacactggataacacaatggaagatctgtta
acactggaatatgtgagggctgaaaagaatgtacccaacttgaaaagtacctataacaat
gtagtgcaactaattaaggtgaatttttcctctttggatattcatttacatactgaagct
cttctgaatacaataaattattttaataatatcttaccacaattggaggaaaaatcagcc
tcattgtatgttgcggagactgaagacaaaggagaggtcattagaaaaatacctttaaaa
ctacccaagaatgaagatattattaccttgcagattttagcagaattatcaagtatacag
atctttattcaaaatcagaaacgtaacatttctgaaattaagattgaagggcttgattct
gagttgataatgaggccttcagtaactgaaataaatgcaaagctaaggaatatagttgtt
ttggattctgatataacagctgtatacaaaaaggctgtttatatcactggaaaagaggtt
ttcagcttcaaaatgatttcttacatggatgcaactgctggttctgcatacacagatatg
aatgtggttgacgttcaagttaacttaactgttggttgcattgaagtagtttttgtcaca
aaatttctatattccatattggcttttatagacaattttcaagaagctaaacaagccttg
actgaggcaactgttcaggcagcaggaatggctgctactggtgtaaaagaactggcacaa
aggagttctagaatggcattggatgttaacatcaaagccccagttgtggtcatcccacag
tctccagtttctgaaaatgtttttgttgctgattttggactaattacaatgacgaatacg
ttccatatgataacagagagtcagagcaaccccccacccattattgatttgataacgata
aagctgagtgaaatgcgactgtacaggactcaatttattaatgatgcatatcaagaagta
ctggatctactactgccattaaatcttgaggtgattgttgagcgaaatttgtcctgggag
tggtaccaggaagttccttgttttaatgtaaatgctcaactaaagcctatggagttcatt
cttagtcaagaagatttaacaactatttttaaaacattatatggcaatatatggtatgaa
gaaggtgatagtgcctcacctgtaggagtaaaagatcagcatactgttgctagtggagtt
agttcatcccattcaggaggaacaactgtagtgacagctgctgtggtagaagtacattca
cgtgcctctcaaattaagacaacactaaacatgagtttcaaaactgattatctcaccatg
gtactgtatagtccaggccccgaacagacttcctttagagatgttcgtgatccttctctg
aaacttgctgaatttaagttggagaatattataagtactttaaaaatgtattcagatgac
tcgacatcatcttccttctcattaaaaaactgtattttagatgataaaaggcctcatgtc
aagaaggcaactcctagaatgataggactgacagttggctttgacaaaaaggacatgatg
gatgtaaggtatagaagagtcagagatggttgggtgactgatttagtccttcaagaaacg
tacatttgtgcaagtgtggaatttctgctgacagttgcaaatgtctttcttgaggcttac
accacgggcactgctgtagaaaccagtgtccaaacatggactgctaaggaagaagtacct
atacaggagtcagtgaagtgggaaattaatattattattaaaaatcctgaaattgtgttt
gtggctgatatgacaagaaatgatgctcctgccttagtcattacaacacagtgtgaaatt
tgttggttaggtgaccttgaaaacaatacaatgactgctgccattaaagatctccaagtg
agagcgtgcccatttcttccagtaaagagaaaaggcaaaatcactactgttttgcagccg
tgtgacttgttctatcaatctactcagacagggacagatccacaagtgattgatgtatca
gtaaaatccctgacgctaaaggtttcaccagttatcataaatactgtgattaccataact
tcagcactttatacaactaaggaaaccatcccacaagaaacagcttcttctacagcacat
ttatgggaaaagaaggatacaaagagtttaaaaatgtggtttcttgaagaaccaaatgaa
gttgaaaacatagctcccacaactgaattagtacccaaaggagagatgataagaatgaac
attgattctatttttatagttcttgaggctggagttggtcatagaacagtgcctatgctt
ttggcgaaatcacgtttttcaggagaaggcaaaaactggagtaccctaataaatctccat
tgtcagcttgaactggaagtgcattattacaatgaaatgttcggtgtatgggagcctttg
cttgaacccttagaaattgatcagactgaggattttagaccatggaatcttggaatcaag
atgaaaaagaaagcaaaaaaggccattgttgagtcagatactgaagaagaaaattacaaa
gtcccagaatataaaactgtcatcagttttcattcaaaagaccaactaaacattacatta
tccaaatgtggccttataatgttaaataatttagtcaaggcgtttacagaagctgccact
agaccttcagctgtcttcgtaagggatctcgcaccatttctgattttaaattctcttgga
cttactatcactgtttcaccaagtgattcttttagcgtactcaatgttcctatggcaaaa
tcatatgtattgaaaaatgaggaaagtttaagtatggattattttggaactaaagacaat
gatcatttcaacgcaatgaccagcctaagcagcaagctcttcttcattcttcttacacct
gctaaccactctgctacggataaaattcctttaacaaaagtgggacgacgactgtacact
gtgagacacagagagtctggagtcgaaagatctatcgtttgtcaaattgatggagaagaa
ggaagtaagaagataacaattcgctccccagtgcagattagaaaccatttttcaatccca
atttctgtttatggaagggacactttattgggaacggcttcacctggaaatgaattcaac
ataccattagcattttaccgatcactcctttttctgaagccagaagatgaggactatcaa
atgtgtgaaggaattgactttgaagaaattataaaaaatgatggcacttgtctaaagaag
aaatgtagacctaaaacctcttccaagaaaccatttatcattaatattgtcccagaaaaa
gataatttaacatctctgtcagtatattcagaagatggttgggacttaccatacataatg
catctatggccacctgtcctactccaaaatcttcttccttataagattgcttattatgta
gaggggattgagcatagagtttctactctaaatgaaggacattcagcccagatttgtact
gtacagttggataaagccaagctacatttaaaattacttgactatcttaatcatgactgg
aaaagtgaatatcatataaaatctaatcaacaagatattagtttcatcaattttacctgt
gttacagaattagaaaagactgatttagatattgctgtccatgtgacttataatactggc
cagacagttgtggcatttcatagtccttattggatggtcaataaaactggtcgaatgttg
cagtataaagcagatggaattcatcgaaagcatccacctaattataaaaagccagttctc
ttttcttttcagccaaagcacttttttaataacaataaggttcagcttatggtaactgat
agtgaattgtcagatcagttttcaattgatactgttggtagtcatggagctgtcaaatgt
aaaggcctgaaaatggaatatcaagttggtgtcactatatacctcagcagttttaacatt
actagaattgtgacatttacccctttttatatgattgaaaataaaagcaaatatcggata
tcagtggctgaagagggaaatgataaatggttctctcttgatgtagagcagtgtatcccc
ttttggcctgaggatgcttctaataaacttctgattcaagttgaaaaaaatgaaggccct
cccaaaaagatacattttaagaagcaagaaaattgtattttattgcgtctagataataag
cttggaggtattatagcagaagttaacttggctgagaattctacagttattaaatttttg
gattatcatgatggagcagctacattcctgttaataaatcacaccaagaatgacattgtt
cagtacatgcaaagttctctcagtgaagtagaagattccctccctcctggaaaagcagta
ttttatacatgggctgatccagtgggctctagaaagctgaagtggatatgtggaaaaagc
catggtgaagtaacacaaaaggatgatatgatgacacctataaatttggggaaaaagacc
atttatttagtttcattctttgaaggcttacagcgcattattttattcactgaagatcca
agggtatttaaagtgacatatgaaagtgagaaagcagagttagcagagcaagaaatcgtg
ctggcattacaagatgttggaatttctctcgtcaacaattacacaaagcaagaagtagcc
tatattggcattacaagttctgatgtggtttgggagacaaagcccaagaagaaggcaaga
tggaagccaatgagtgttaaacacactgagaagttagagagagaatttaaggaatatgct
gaatcttcaccttcagaagataaggttatagagttggacactaacattccggttcgcttc
acacctactgggactaacatgaaaattctgcaaccgcatgtaatagctatacgaagaaat
tatcttccagcattgaaagtggaatatagcacatctgcacaccagtcatcctttagaatt
caaatttatagaatacagatccaaaaccagatacatggtgctgtatttccatttgtgttt
tatcctattaaacctcccaagtcaatcaccatggattcagcaccaaagccctttacagat
gtcagtattgtcatgagatctgcagggcattcccaaatatcacgtattaagtacttcaaa
gtgttgatccaagaaatggatctcaggttggatcttggctttgtctatgctttagcagaa
cttatgacagaagctgaagtgactgaaaaaacggagattgaactttttcataaagatata
gaagctttccaagaagaatataaaacagtttcatcggtagattcatcacaagtcagtctc
tatgaatattttcatatatctcctatcaagttgcatttaagtgtttcactgagttcgggt
aaagaagctaaagattcagaacaacatggagggctgcttgcagttcattctttaaatctg
ttactgaagagtattggtgccactcttacaaatgtacaagatgtagtttttaagcttgca
ttttttgaactcaactatcagttccatacaacatctgaactacagtctgaagtaataaga
cactactcaaaacaggccattaagcagatgtatgtactcattcttggacttgaagttttg
ggaaacccttttggcttgattagagaattttctgaaggtgtagaagcatttttttatgaa
ccttaccagggagccattcagggtcctgaagagtttgtggagggaatggcactaggactg
aaggcactagttggtggagctgttggtggattagctggtgctgcctccagaatcaccagt
gctatggctaaaggggtagcagctatgactatggatgaagactaccaacagaagagaaga
gaagccatgaataagcagccagctggtcttagagaaggcatcactcgtggaggaaaaggc
ttagtttctggttttgtaagtggcataacaggaattgttacaaaaccaatcaaaggagct
caaaaagaaggggcagctggtttctttaaaggtgttgggaaaggtttagttggagcagtg
gcaaggccaacaggaggcatcatagacatggctagcagtacgtttcagggaataaaaaga
gctacagagacttctgatgaagtggcgagtctgcgacctcctcgattctttaatgaagat
ggagttatcagaccttacaggttgagggatggcactggaaatcaaatgttacaggtcata
gaaaatggaagatttgcaaaatataaatattttacccatgtcatgataaataaaacagat
atgttaatgataaccaaaagtggtatattgtttgtaacaaaaggaacatttggacagctt
acatgtgagtggcagtatagttttgatgagtttaccaaagagccattcattgttcatgga
agaagattgcgcattgaagcaaaggaacgagtgaagtctgtattccactccaaagagttt
ggaaaaataattaacttcaagacccctgaggatgctaggtggatcctcacaaagctagaa
gaagcaagagaaccttccccgaggctctga
DBGET
integrated database retrieval system
