Equus caballus (horse): 106782925
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Entry
106782925 CDS
T01058
Symbol
SCAF8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecb03021
]
106782925 (SCAF8)
03041 Spliceosome [BR:
ecb03041
]
106782925 (SCAF8)
Transcription machinery [BR:
ecb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106782925 (SCAF8)
Spliceosome [BR:
ecb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
106782925 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106782925
NCBI-ProteinID:
XP_023488741
Ensembl:
ENSECAG00000005540
VGNC:
52434
LinkDB
All DBs
Position
31:complement(12841920..12920287)
Genome browser
AA seq
1335 aa
AA seq
DB search
MPQPPLPALPPPSSPRAVGSCGPSGGECSGRRLFRRRARGLRSDNMEAVKTFNSEDCAST
PACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKC
KPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVL
NLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGL
PDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQ
ALTAQLTAAAAAANTLNPLDQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSES
VNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQH
FLEPEANLDDSIDIQQQDMDIDEGQEGVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKR
RSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSV
CSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSS
GSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQET
VNTEWETVKSSEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSL
VPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTS
LVQPPLSMTPEAVKDVGFGSLVLPGGSVASSLATSTLPAGNVFNPPTKQAEPEEKVPHLI
DHQISSGENTRSVIPNDISSSPAILGGQPPNVTSNSGILGVQRPNVSSNSEILGVRPSNV
SSTSGIIGAQPPNILNNSGILGIQPPSVSSSSGLLGVLPPNIPNNSGLIGVQPPNVPNIS
GPLGTQPPAGPQNLPPLNLSTQRMPAMPMLDIRPGLIPQTPGPRFPLIQPGIPPQRGIPP
PSVLDSALHPPPRGPFPPGDIFSQPERPFLVPGRQSVDNVTNPEKRIPLGNDNIQQEGDR
DYRFPPIETRESISRPPPVDVRDVVVRPVDPREGPGRPPLDGRDHFGRPPVDMRENLVRP
GIDHLGRRDHFGFNPEKPWGHRDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSG
PWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIPNWVPPPHARVF
DFFEGATSQRKGDNVPQVNGENTERHAQPPPLPGQSDPELYEKLTSSSEISKEKSDTVAD
IESEPVVESTETEGT
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagccgccgctgccagcgcttcctcctccgtcttcgccgcgcgctgttggttcc
tgcggcccgagcggcggggagtgcagtggccgccgcctcttccgccgccgggcccggggc
ctccgcagcgacaacatggaggctgtgaaaaccttcaacagcgaggattgtgcctctact
cctgcttgtacagactgcttttccagcagcatggacacaagaagcatattgtattcccta
aatgactacaaaccacccatttctaaagcaaaaatgacccaaattactaaggcagccatc
aaagctattaagttctataaacatgtggtacagagtgttgagaaattcattcagaaatgt
aaaccagaatacaaggtacctggactttatgttattgactccattgtacgacaatctcga
catcagtttggtcaagaaaaggatgtgtttgcgcccagatttagtaataacatcattagc
actttccagaatttatatcggtgccctggggatgacaagagtaaaatagtgagagtatta
aacttatggcagaagaataatgtgtttaagagtgagattattcagcctcttttggatatg
gcagcagggattcctcctccagttgtcacgcctgttttggccagtactactgctgccatg
agcaacacaccaggaactcccgtgacacctgttactccagccaatgtggtccaaggttta
cctgatccatgggtatctcagataacaaatacagatacgcttgcagctgtagcccagatc
ttacaaagccctcaaggccaacaacttcagcagttaatacagactttacagatacaacag
cagaagccgcagccttccattctgcaggccctggatgctggtctcgtcgttcagctgcag
gctcttacagcacaacttacagctgcagctgcagcagccaacacccttaaccccttagat
cagggggtgtcttttaacaagaagttgatggataggtttgattttggggaagattctgag
catagtgaagaaccgaaaaaggaaattccagcttctcaactttctcatgtttcagaatct
gtgaacaattccatttttcatcagatagcagaacaactacagcagcaaaaccttgaacat
ctcagacagcagctcctggaacagcaacagcctcagaaggcaacccctcaggacagtcag
gaaggaacctttgggtcagagcactctgcgtcaccatcacaaggcagcagtcagcagcat
ttcttggaacctgaagcaaatttggatgattccatagatattcagcaacaggatatggat
atagatgaaggacaagagggagtagaagaggagatctttgaacaagaagcaaagaaagtg
gctgttcgctcgagatcaagaacacattcacgatctcgttcaagatcaccaagaaaacga
aggtccaggtcacgatctggctctcgaaagcgcaaacacagaaagcgctcacgctcacgc
tcaagagagaggaagaggaagtcatcacgctcatactcgagtgagaggagagccagagag
agggagaaagagcgacagaagaaggggttacctccaattagatctaaaacattaagtgtg
tgtagtactactctgtgggttggtcaggtggacaagaaggcaacgcagcaagatttaacc
aacctgtttgaagagtttggacaaattgaatccattaatatgattcctcccaggggctgt
gcttatgtctgcatggttcatcgacaagacgcatttcgggctcttcagaaacttagttct
ggatcatataaaattgggtccaaggtcattaagattgcttgggctctcaacaaaggtgta
aaaacagaatataagcagttctgggatgtggatcttggagttacatacataccatgggaa
aaggttaaagtggacgacttggaaggttttgcagaaggaggcatgattgaccaggaaact
gtaaatactgagtgggaaactgtgaaaagctcagaacccgttaaagagacggtgcagaca
actcagagcccacctccagttgaaaaggagacagtggtcacaacccaggcagaggttttc
cctccacctgttgctatgttacagattccagtagcaccagccgtgcctacagttagttta
gtcccaccagcatttcctgtgtcaatgcccgttcctcctcctggattcagtccaattcct
ccacctccttttctgcgagcaagttttaacccttcgcaaccacctcctggtttcatgcca
cctccagttccaccacctgttgtaccaccacctactattccaccagtagtaccaacatca
ttagtgcagccacccttatccatgactccagaagctgtgaaagatgttggatttggcagc
cttgtcttaccaggtggttctgttgccagcagtcttgctacttccacgctgccagctgga
aatgtttttaatcctccaactaaacaagcagagcctgaagaaaaagtacctcatcttata
gaccaccagatttcttctggtgaaaacaccagatcagtgattccaaatgatatatcaagt
agccctgcaattttaggaggacagccaccaaatgtgacaagcaattctggaattctggga
gtccaaagaccaaatgtatcaagtaattctgaaattcttggagtccggccatctaatgtt
tccagtacttctgggattattggagcccagccaccaaatattctaaataactctggaatt
ttgggaatacagccaccaagtgtgtcgagtagttctggacttttgggagtgctaccgcca
aatatccctaacaattccggacttataggagtacagccaccaaatgtcccaaatatttct
ggacctttgggaacacaaccaccagctgggcctcagaacctaccccctttaaatctctct
actcaaaggatgcctgcaatgccaatgttagacattcgtccaggactaataccacagaca
cctggaccaagattccctttaatacagcctggaatcccaccccaaaggggaatcccccca
ccgtcagtacttgattcagctcttcatccaccaccccgtggtccttttcctccaggagat
atttttagtcagccagaaagaccttttctagttcctggaagacaaagtgtagacaacgtt
actaatccagagaaaaggataccacttgggaatgacaacattcaacaagaaggagacaga
gattaccggtttcctcccatagaaaccagggaaagcattagtagaccacccccggtggat
gttagggatgtggttgtacggcctgtggatccaagagaaggtcctggaaggcctccatta
gatggtagggatcattttggaagacctcctgtagacatgagagagaatcttgtgaggcca
ggtatcgatcatcttggtcgaagagatcactttggctttaatccagagaaaccttggggg
catagagattttgacgagagagagcaccgggttctacctgtctatggtggcccaaagggc
ttacatgaagaaagaggcagatttcggtctggaaactatcgctttgaccctagaagtggt
ccttggaacagaggatttggacaagaagttcacagagattttgatgaccgcagaagacct
tgggagaggcagagggatagggatgacagagattttgatttctgcagagaaatgaatgga
aatcgtcttggacgagatagaattccaaactgggtcccccctcctcatgctcgggttttt
gatttttttgaaggggccacttctcaacgaaaaggtgataatgtgcctcaggttaatggt
gaaaataccgagagacatgctcaaccaccacctttaccaggacagagtgatcctgaactt
tatgaaaaactgacatcttcaagtgaaataagcaaggagaagagtgacacagttgctgat
atagaaagtgaaccagtggtagaaagcacagaaactgaggggacataa
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