Escherichia coli O6 K2 H1 CFT073 (UPEC): c1389
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Entry
c1389 CDS
T00106
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecc
Escherichia coli O6:K2:H1 CFT073 (UPEC)
Pathway
ecc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
c1389 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecc03400
]
c1389 (mfd)
Enzymes [BR:
ecc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
c1389 (mfd)
DNA repair and recombination proteins [BR:
ecc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
c1389 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AAN79858
UniProt:
A0A0H2V7A9
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Position
complement(1315400..1318255)
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AA seq
951 aa
AA seq
DB search
MLIRDMPSYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHA
GPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP
TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH
GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEFPT
DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN
TLLVNTGDLENSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL
KTEHLPTKAANANLGFQKLPDLAIQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALG
ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTMRNLALICESDLLGERVARRRQ
DSRRAINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL
YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE
GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM
RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV
AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI
PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDV
ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT
ANTIIIERADHFGLAQLHQLRGRVGRSXPPGICMATDAASKSDDYRCAKTS
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
ttgcttatcagagatatgccctcatatgttgaggcatatcctaacgagaatctgacaacc
gttatgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctg
ggcgagttaaccggcgctgcctgcgcgacgctggtagcggaaattgccgaacgtcacgcc
ggtccggtggtactcattgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatc
agccagttcaccgatcagatggtgatgaatctggcggactgggaaaccctcccttacgac
agtttttcgcctcatcaggacattatctcctcgcgtctttccaccctttaccagctaccg
accatgcagcgtggcgtactgattgttccggtgaatacgcttatgcagcgcgtttgcccg
cacagctttctccacggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagat
gcattacgaacccaactggacagcgccggttatcgccatgttgaccaggtgatggagcac
ggcgaatacgccacgcgcggcgcgttgctggatctcttcccgatggggagtgagctgcct
tatcgtcttgatttctttgatgatgaaatcgacagcctgcgggtgtttgacgtcgatagc
cagcgcacgctggaggaagtagaagagatcaatctgcttcccgcgcacgaatttcctacc
gataaagcggcaattgaactgttccgcagccagtggcgtgataccttcgaagtgaagcgc
gacccggaacatatttatcagcaagtgagtaaaggcacattacctgccgggatcgagtac
tggcagccgctattcttcagcgaaccgctgccgccactgttcagttatttccctgccaat
acgctgttggtgaatactggcgatctggaaaacagtgccgaacgtttccaggctgacacg
ctggcgcgttttgagaatcgcggcgtcgacccaatgcgcccactgttgccaccacaatcg
ctctggctgcgggtggatgagctcttctcagagctgaaaaactggccccgtgtgcagcta
aaaactgaacatttaccgacaaaagcagcgaatgccaatttaggtttccagaaactgcca
gacctggccattcaggcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgag
tctttcgacggtccggtggtgttctcggtagaaagtgaaggccgccgtgaagcgttgggt
gaactgctcgcgcgaattaaaattgctccgcaacgcattatgcgtcttgatgaagccagc
gaccgtgggcgttatctgatgattggcgctgccgaacatggttttgtcgatacgatgcgt
aacctggcgctgatttgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcag
gattctcgccgcgccatcaaccccgatacactgatccgtaaccttgcggagctgcatatt
ggtcagccggtggtccatctggagcacggcgtcggtcgttatgccggaatgaccacgctc
gaagctggaggcattactggcgagtatttgatgctcacctatgccaacgacgccaaactg
tatgttccggtgtcgtcactgcatctgattagccgttacgcgggtggcgcagaagaaaac
gcaccactgcataaacttggtggcgatgcctggtcacgcgcacggcagaaagcggcggaa
aaagtgcgtgatgtggcggcggaattgctggatatctacgcgcaacgcgccgccaaagag
ggcttcgcgtttaaacacgatcgcgagcagtatcagttattctgcgacagcttcccgttt
gaaaccacgccggatcaggcgcaggccattaatgcggtgcttagcgacatgtgtcagccg
ctggcaatggatcgtctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatg
cgcgccgctttcctggcggtagataaccacaaacaggtggcggtgctggtgcctaccacc
cttctcgcgcagcagcattacgacaacttccgcgaccgtttcgccaactggccggtacgt
atcgaaatgatctcccgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtg
gcggaagggaaaatcgatattctgatcggtacgcacaaactgctgcaaagtgacgtcaag
tttaaagatttaggcctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaa
gagcgcattaaagcgatgcgcgcgaacgtggatattctgacgcttaccgcaacgccgatc
ccacgtacgctgaatatggcaatgagcggaatgcgcgatctgtcgattatcgccacgccg
cccgcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagtctggtggtccgg
gaggcgatcctgcgtgaaattttgcgcggaggacaggtttattatctctacaatgatgtg
gaaaacatccagaaagccgccgaacggctggcagaactggtacctgaagcgcggattgcc
atcggtcacgggcaaatgcgtgagcgcgaactggaacgggtgatgaatgatttccatcat
caacgtttcaacgtgctggtttgtaccaccattatcgaaaccgggatcgacattcctacc
gccaacaccattatcattgaacgcgcggatcacttcggtctggcacagttgcaccagttg
cgcggtcgcgtcgggcgttctncaccaccaggcatatgcatggctactgacgccgcatcc
aaaagcgatgactaccgatgcgcaaaaacgtcttga
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