Escherichia coli O6 K2 H1 CFT073 (UPEC): c2208
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Entry
c2208 CDS
T00106
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ecc
Escherichia coli O6:K2:H1 CFT073 (UPEC)
Brite
KEGG Orthology (KO) [BR:
ecc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecc03016
]
c2208 (rnd)
Enzymes [BR:
ecc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
c2208 (rnd)
Transfer RNA biogenesis [BR:
ecc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
c2208 (rnd)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AAN80667
UniProt:
A0A0H2V985
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All DBs
Position
complement(2038536..2039663)
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AA seq
375 aa
AA seq
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MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI
TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS
MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL
DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR
EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQALPEEALPQPMLNLMDM
PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE
LMAEALHNLLQEYPQ
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgaattaccaaatgattaccacggacgatgcgctggcttctttgtgtgaagccgtccgt
gcctttccggcgatagccctggatactgaatttgttcgtacgcgcacttattacccgcag
ctgggtttaattcaactttttgatggtgagcatctggcgctaattgatcctctcgggatc
accgactggtcaccgctgaaagcgatcctgcgcgatccgtccatcacaaaatttcttcat
gcaggcagtgaagatctggaagtgttcctcaatgtctttggcgaattaccacaacccttg
attgacacgcaaatccttgctgccttctgcggacgcccgatgtcatggggtttcgcttcc
atggtggaagagtattccggcgttacgctggacaagagtgaatcgcgcaccgactggctg
gccagaccgctgaccgaacgtcagtgtgaatacgcagcggcggatgtctggtatctgtta
ccgatcaccgcaaagcttatggtagaaacggaggcctccggctggctacctgcggcgctg
gatgaatgccgcctgatgcaaatgcgtcgtcaggaagtcgttgcgccggaagacgcctgg
cgtgatatcaccaatgcctggcaattacgcacacgccaactggcctgtctgcaactgtta
gccgactggcgattgcgcaaggcgcgagagcgcgatctggcggtgaactttgtcgtgcgt
gaagagcatttgtggtcggtagcgcgttatatgccgggaagtctgggcgaactggacagc
ctgggcttatccggtagcgaaatccgcttccacggtaaaacgttgctggcgctggtggaa
aaagcgcaggcattgccggaagaggccttaccgcagccgatgcttaacctgatggacatg
ccgggttatcgtaaagcgtttaaagcgattaagtcgctgattactgacgtcagcgaaacg
cacaagatcagcgccgaattgctggcatcgcgtcggcaaatcaaccaattgctgaactgg
cactggaaactgaaaccgcagaacaatttgccggagctgatttccggctggcgtggtgag
ctgatggcggaagcattacacaatttattgcaggaatatccacagtaa
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