| Entry |
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| Symbol |
rpoB
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| Name |
(GenBank) DNA-directed RNA polymerase beta chain
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| KO |
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| Organism |
ecc Escherichia coli O6:K2:H1 CFT073 (UPEC)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:ecc00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
c4944 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ecc03021]
c4944 (rpoB)
03400 DNA repair and recombination proteins [BR:ecc03400]
c4944 (rpoB)
Enzymes [BR:ecc01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
c4944 (rpoB)
Transcription machinery [BR:ecc03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
c4944 (rpoB)
DNA repair and recombination proteins [BR:ecc03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
c4944 (rpoB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
4713339..4717400
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| AA seq |
1353 aa
MGRLVSELRNPMVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGL
EAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA
PEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK
VLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI
FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV
EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE
TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL
LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV
RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR
ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET
PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ
VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA
VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP
CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT
TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP
KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE
EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN
QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR
HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG
AKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG
SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV
DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
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| NT seq |
4062 nt +upstreamnt +downstreamnt
atgggtcgacttgtcagcgagctgaggaaccctatggtttactcctataccgagaaaaaa
cgtattcgtaaggattttggtaaacgtccacaagttctggatgtaccttatctcctttct
atccagcttgactcgtttcagaaatttatcgagcaagatcctgaagggcagtatggtctg
gaagctgctttccgttccgtattcccgattcagagctacagcggtaattccgagctgcaa
tacgtcagctaccgccttggcgaaccggtgtttgacgtccaggaatgtcaaatccgtggc
gtgacctattccgcaccgctgcgcgttaaactgcgtctggtgatctatgagcgcgaagcg
ccggaaggcaccgtaaaagacattaaagaacaagaagtctacatgggcgaaattccgctc
atgacggacaacggtacctttgttatcaacggtactgagcgtgttatcgtttcccagctg
caccgtagtccgggggtcttttttgactccgacaaaggtaaaacccactcttcgggtaag
gtgctgtataacgcgcgcatcatcccttaccgtggttcctggctggacttcgaattcgat
ccgaaggacaacctgttcgtacgtatcgaccgtcgccgtaaactacctgcgaccatcatt
ctgcgtgccctgaactacaccacagagcagatcctcgacctgttctttgaaaaagttatc
tttgaaatccgtgataacaagctgcagatggaactggtgccggaacgcctgcgtggtgaa
accgcatcttttgacatcgaagctaacggtaaagtgtacgtagaaaaaggccgccgcatt
actgcgcgccatattcgccagctggaaaaagacgacgtcaagctgatcgaagtcccggtt
gagtacatcgcaggtaaagtggttgctaaagactacattgatgagtctaccggcgagctg
atctgcgcagcgaacatggagctgagcctggatctgctggctaagctgagccagtctggt
cataagcgtatcgaaacgctgttcaccaacgatctggatcacggcccatatatctctgaa
accttacgtgtcgacccaactaacgaccgtctgagcgcactggtagaaatctaccgtatg
atgcgccctggcgagccgccgactcgtgaagctgctgaaagcctgttcgagaacctgttc
ttctccgaagaccgctatgacttgtctgcggttggtcgtatgaagttcaaccgttctctg
ctgcgcgaagaaatcgaaggttccggtatcctgagcaaagacgacatcattgatgttatg
aaaaagctcatcgatatccgtaacggtaaaggcgaagtcgatgatatcgaccacctcggc
aaccgtcgtatccgttctgttggcgaaatggcggaaaaccagttccgcgttggcctggta
cgtgtagagcgtgcggtgaaagagcgtctgtctctgggcgatctggataccctgatgcct
caggatatgatcaacgccaagccgatttccgcagcagtgaaagagttcttcggttccagc
cagctgtctcagtttatggaccagaacaacccgctgtctgagattacgcacaaacgtcgt
atctcggcacttggcccaggcggtctgacccgtgaacgtgcaggcttcgaagttcgagac
gtacacccgactcactacggtcgcgtatgtccaatcgaaacccctgaaggtccgaacatc
ggtctgatcaactccctgtccgtgtacgcacagactaacgaatacggcttccttgagact
ccgtatcgtaaagtgaccgacggtgttgtaactgacgaaattcactatctgtctgctatc
gaagaaggcaactacgttatcgcccaggcgaactccaacctggatgaagaaggccacttc
gtagaagacctggtaacttgccgtagcaaaggcgaatccagcttgttcagccgcgaccag
gttgactacatggacgtatccacccagcaggtggtatccgtcggtgcgtccctgatcccg
ttcctggaacacgatgacgccaaccgtgcattgatgggtgcgaacatgcaacgtcaggcc
gttccgactctgcgtgctgataagccgctggttggtacgggtatggaacgtgctgttgcc
gttgactccggtgtaactgcggttgctaaacgtggtggtgtcgttcagtacgtggatgct
tcccgtatcgtaatcaaagttaacgaagacgagatgtatccgggtgaagcaggtatcgac
atctacaacctgaccaaatacacccgttctaaccagaacacctgtattaaccagatgccg
tgtgtgtctctgggtgaaccggttgaacgtggcgacgtgctggcagacggtccgtccacc
gacctcggtgaactggcgcttggtcagaacatgcgcgtagcgttcatgccgtggaatggt
tacaacttcgaagactccatcctcgtatccgagcgtgttgttcaggaagaccgtttcacc
accatccacattcaggaactggcgtgtgtgtcccgtgacaccaagctggggccagaagag
atcaccgctgacatcccgaacgtgggtgaagctgcgctctccaaactggatgaatccggt
atcgtttacattggtgcggaagtgaccggtggcgacattctggttggtaaggtaacgccg
aaaggcgaaactcagctgaccccagaagaaaaactgctgcgtgcgatcttcggtgagaaa
gcgtctgacgttaaagactcttctctgcgcgtaccaaacggtgtatccggtacggttatc
gacgttcaggtctttactcgcgatggcgtagaaaaagacaaacgtgcgctggaaatcgaa
gaaatgcagctcaaacaggcgaagaaagacctgtctgaagaactgcagatcctcgaagcg
ggtctgttcagccgtatccgtgctgtgctggtagccggtggcgttgaagctgagaagctc
gacaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaat
cagctggaacagctggctgagcagtatgacgaactgaaacacgagttcgagaagaaactc
gaagcgaaacgccgcaaaatcacccagggcgacgatctggcaccgggcgtgctgaagatt
gttaaggtatatctggcggttaaacgccgtatccagcctggtgacaagatggcaggccgt
catggtaacaagggtgtaatttctaagatcaacccgatcgaagatatgccttacgatgaa
aacggtactccggtagacatcgtactgaacccgctgggcgtaccgtctcgtatgaacatt
ggtcagatcctcgaaacccacctgggtatggctgcgaaaggtatcggcgacaagatcaac
gccatgctgaaacagcagcaagaagtcgcgaaactgcgcgaattcatccagcgtgcgtac
gatctgggcgctgacgttcgtcagaaagttgacctgagtaccttcagcgatgaagaagtt
atgcgtctggctgaaaacctgcgcaaaggtatgccaatcgcaacgccggtcttcgacggt
gcgaaagaagcagaaattaaagagctgctgaaacttggcgacctgccgacttctggtcag
atccgcctgtacgacggtcgcactggtgaacagttcgagcgtccggtaaccgttggttac
atgtacatgctgaaactgaaccacctggtcgacgacaagatgcacgcgcgttccaccggt
tcttatagcctggttactcagcagccgctgggtggtaaggcacagttcggtggtcagcgt
ttcggggagatggaagtgtgggcgctggaagcatatggcgcagcatacaccctgcaggaa
atgctcaccgttaagtctgatgacgtgaacggtcgtactaagatgtataaaaacatcgtg
gacggcaaccatcagatggagccgggcatgccagaatccttcaacgtattgttgaaagag
attcgttcgctgggtatcaacatcgaactggaagacgagtaa |
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