Escherichia coli K-12 DH10B: ECDH10B_1539
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Entry
ECDH10B_1539 CDS
T00666
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecd
Escherichia coli K-12 DH10B
Brite
KEGG Orthology (KO) [BR:
ecd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecd03019
]
ECDH10B_1539 (hrpA)
Enzymes [BR:
ecd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECDH10B_1539 (hrpA)
Messenger RNA biogenesis [BR:
ecd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECDH10B_1539 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ACB02631
LinkDB
All DBs
Position
1571680..1575582
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttacggccttgcagcagcggctggattcgctgatg
ctgcgtgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttaccggttagt
cagaaaaaacaggacattctcgaagcgattcgtgatcaccaggtggtgatcgtcgccggg
gaaacgggttctggtaaaacgactcagttaccgaaaatctgtatggagctggggcgcggg
attaaaggactgatcggccatacccagccgcgtcgtctggcggcaagaacagtggcgaac
cgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacactatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattattgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagccgatgacaccgagcgcgatcagttgcaggcgatttttgac
gccgtagacgaactgagtcaggaaagccatggcgacattctgatctttatgagcggcgag
cgggaaatccgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcgcggctttcgaacagcgaacaaaatagggtattccagtcgcacagc
ggacggcgcattgtgctggcgaccaacgtcgcggaaacgtcgctgaccgtaccggggatt
aaatacgttatcgaccccggtacagcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgagccgatttcccaggcgtctgccaatcagcgtaaaggccgctgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcagatg
accgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagagctgggcgcgatcaccactgatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgaccca
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccattcaggatccgcgcgaacgtccgatggacaaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagagtctgactttctcgcgtttgtgaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgtcaggtggtgaaagaacttggcattccggttaacagcgaaccggcggagtatcgc
gaaattcacattgcgttgctgaccggtttactttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggttta
ttcaaaaaaccgcctaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgctgcgcgtatcgacccggaatgggtggagccagttgctcagcatttgatt
aaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactacgggcggaagtagaagagctggaa
cacaaatcacgtcgccgcgatattctggttgatgacgaaacgttgtttgagttctacgac
cagcgcatcagccacgatgtaatctccgctcgccacttcgacagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaaaagcatgttgatcaaagagggcgca
gaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtacatattccgctg
ccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccccggtctgcgccgc
gaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgtaccc
gcgccaaactatgccgaagcgtttttaggccgcgtcaaaccgctggagttaccgttgctc
gacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaattaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaagtg
caggaaacgctatctgcggtggcggatgacggtatcgagcagagcggcttacatatctgg
agttttggtcagctgccggaaagctacgaacagaagcgtggcaactacaaagtgaaggcg
tggccggcgctggtggatgagcgcgacagtgtggcgatcaaactgtttgataacccgctg
gagcaaaagcaggcaatgtggaacggtcttcgccgtctactgctgctgaatattccatcg
ccaatcaaatatttacatgaaaagttaccgaacaaagccaagctgggactgtactttaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggataaattg
atcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtgcgtgccgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctt
acggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcactggt
aacggcttcaaacggctgggcgacacgctgcgatatttgcaggcgattgaaaaacggctg
gaaaaactggcggttgatccacatcgcgaccgtgcgcagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggatcaacaaactgccgcccgcacgtcgtgaggatgaagac
gtgaaagagatccgttggatgatagaagagttgcgcgttagttacttcgctcaacaactt
ggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagcggt
taa
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