Escherichia coli O157 H7 EDL933 (EHEC): Z1258
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Entry
Z1258 CDS
T00044
Symbol
himD
Name
(GenBank) integration host factor (IHF), beta subunit; site-specific recombination
KO
K05788
integration host factor subunit beta
Organism
ece
Escherichia coli O157:H7 EDL933 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ece00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ece03032
]
Z1258 (himD)
03036 Chromosome and associated proteins [BR:
ece03036
]
Z1258 (himD)
03400 DNA repair and recombination proteins [BR:
ece03400
]
Z1258 (himD)
DNA replication proteins [BR:
ece03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Z1258 (himD)
Chromosome and associated proteins [BR:
ece03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Z1258 (himD)
DNA repair and recombination proteins [BR:
ece03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Z1258 (himD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
HU-DNA_bdg
MDMPI_C
HAAS
Motif
Other DBs
NCBI-ProteinID:
AAG55397
UniProt:
P0A6Y3
LinkDB
All DBs
Position
1182694..1182978
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AA seq
94 aa
AA seq
DB search
MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT
GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtcagaattgatagaaagacttgccacccagcaatcgcacattcccgccaag
acggttgaagatgcagtaaaagagatgctggagcatatggcctcgactcttgcgcagggc
gagcgtattgaaatccgcggtttcggcagtttctctttgcactaccgcgcaccacgtacc
ggacgtaatccgaagactggcgataaagtagaactggaaggaaaatacgttcctcacttt
aaacctggtaaagaactgcgcgatcgcgccaatatttacggttaa
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