Escherichia coli O157 H7 EDL933 (EHEC): Z4523
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Entry
Z4523 CDS
T00044
Symbol
deaD
Name
(GenBank) inducible ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ece
Escherichia coli O157:H7 EDL933 (EHEC)
Pathway
ece03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ece00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Z4523 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ece03019
]
Z4523 (deaD)
03009 Ribosome biogenesis [BR:
ece03009
]
Z4523 (deaD)
Enzymes [BR:
ece01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Z4523 (deaD)
Messenger RNA biogenesis [BR:
ece03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Z4523 (deaD)
Ribosome biogenesis [BR:
ece03009
]
Prokaryotic type
rRNA helicases
Z4523 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AAG58298
UniProt:
Q8XA87
LinkDB
All DBs
Position
complement(4115684..4117624)
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AA seq
646 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG
RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFSGERR
EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaattcaggcggagtgtattccacatctgctgaatggc
cgcgacgtactgggtatggcccagacggggagcggaaaaactgcagcattctctttacct
ctgctgcaaaatcttgatcctgagctgaaagcaccacagattctggtgctagcaccgacc
cgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacacatgcgcggc
gtaaatgtggttgccctgtacggcggccagcgttatgacgtgcaattacgcgccctgcgt
caggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctgaaacgtggc
actctggacctctctaaactgagcggtctggttctggatgaagctgacgaaatgctgcgc
atgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggtcatcagacc
gctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tattggactgtctggggtatgcgtaaaaacgaagcactggtacgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaatgcgactctggaagtggctgaa
gctcttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaaccaggcgctg
cgtgagcagacactggaacgcctgaaagatggtcgtctggacatcctgattgcgaccgac
gttgcagcccgtggcctggacgttgagcgtatcagcctggtggttaactacgatatcccg
atggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggtcgtgctggc
cgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacattgaacgtact
atgaagctgactattccggaagtagaactgccgaacgcagaactgctgggcaaacgccgt
ctggaaaaattcgccgctaaagtacagcagcagctggaaagcagcgatctggatcaatac
cgcgcactgctgagcaaaattcagccgactgcagaaggtgaagagctggatctcgaaact
ctggccgccgcactgctgaaaatggcacagggtgaacgtactctgattgttccgccagat
gcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccgcgcgatcgt
aacgaccgtggtccgcgtggcgaccgtgaagatcgtccgcgtcgtgaacgtcgtgatgtt
ggtgacatgcagttgtaccgtattgaagtgggccgcgatgatggtgttgaagttcgtcat
atcgttggtgcgattgctaacgaaggcgacatcagcagccgttacatcggtaacattaag
ctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaagtgctgcaa
cactttacacgtactcgcattctgaacaagccgatgaatatgcaattactgggcgatgca
cagccgcatactggcggagagcgtcgtggcggtggtcgtggtttcagtggcgagcgtcgt
gaaggtggtcgtaacttcagcggtgaacgccgtgaaggtggtcgtggtgatggtcgtcgt
tttagcggcgaacgtcgtgaaggccgcgctccgcgtcgtgatgactctaccggtcgtcgt
cgtttcggwggtgatgcgtaa
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