Escherichia coli O157 H7 EDL933 (EHEC): Z5786
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Entry
Z5786 CDS
T00044
Symbol
vacB
Name
(GenBank) putative enzyme
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ece
Escherichia coli O157:H7 EDL933 (EHEC)
Pathway
ece03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ece00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Z5786 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ece03019
]
Z5786 (vacB)
03016 Transfer RNA biogenesis [BR:
ece03016
]
Z5786 (vacB)
Enzymes [BR:
ece01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Z5786 (vacB)
Messenger RNA biogenesis [BR:
ece03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Z5786 (vacB)
Transfer RNA biogenesis [BR:
ece03016
]
Prokaryotic type
tRNA degradation factors
Z5786 (vacB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AAG59375
UniProt:
A0A0H3JMP1
LinkDB
All DBs
Position
5290324..5292807
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AA seq
827 aa
AA seq
DB search
MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHI
EGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD
DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVV
PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI
ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP
QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH
LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA
NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV
ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLMLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNV
FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV
EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD
SAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaaatcttcatcagagatgacaacggaggaaccgagatgtcacaagatcctttc
caggaacgcgaagctgaaaaatacgcgaatcccatccctagtcgggaatttatcctcgaa
catttaaccaaacgtgaaaaaccggccagccgtgatgagctggcggtagaactgcacatt
gaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgcgcgatggagcgcgatggt
caactggtctttactcgtcgtcagtgctatgcgctgccggaacgcctcgacctggtgaaa
ggtaccgttattggccaccgtgatggctacggctttctgcgggttgaagggcgtaaagat
gatttgtatctctccagcgagcagatgaaaacctgcattcatggcgatcaggtgctggct
cagccgctgggtgctgaccgtaaaggtcgtcgtgaagcgcgtattgtccgcgtactggtg
ccaaaaaccagccagattgttggtcgctactttaccgaagcgggcgtcggctttgtggtt
cctgacgatagccgtctgagcttcgatatcttaatcccgcccgatcagatcatgggcgcg
cggatgggctttgtggtggttgttgaactgacccaacgcccgactcgccgtaccaaagcg
gtgggtaaaatcgtcgaagtgctgggcgacaatatgggcacgggcatggcggttgatatc
gctctgcgtacccatgaaattccgtacatctggccgcaggctgttgagcaacaggttgct
gggctgaaagaagaagtgccggaagaagcaaaagcgggccgtgtcgatttgcgcgattta
ccgctggtcaccattgatggcgaagacgcccgtgactttgacgatgcggtttactgcgag
aaaaaacgcggcggcggctggcgtttatgggtcgcgattgctgacgtcagctactatgtg
cgtccgccaacgccgctggacagagaagcgcgtaaccgtggtacgtcggtgtacttccct
tcgcaggttatcccgatgctgccggaagtgctctctaacggtctgtgctcgctcaatccg
caggtagaccgcctgtgtatggtgtgcgagatgacggtttcgtcgaaaggccgcctgact
ggctacaaattctacgaagcggtgatgagctctcacgcgcgtctgacctacaccaaagtc
tggcatattctgcagggcgatcaggatctgcgcgagcagtacgccccgctggttaagcat
ctcgaagagttgcataacctctataaagtgctggataaagcccgtgaagaacgcggcggg
atctcatttgagagcgaagaagcgaagttcattttcaacgctgaacgccgtattgaacgt
atcgaacagactcagcgtaacgacgcacacaagttaattgaagagtgcatgattctggcg
aatatctcggcggcgcgtttcgttgagaaagcgaaagaaccggcactgttccgtattcac
gacaagccgagcaccgaagcgattacctctttccgttcagtgctggcagagctggggctg
gaactgccgggcggtaacaagccggaaccgcgcgactacgcggagctgctggagtcggtt
gccgaccgtcctgatgcagaaatgctgcaaaccatgctgctgcgctcgatgaaacaggcg
atttacgatccggaaaaccgtggtcactttggcctggcattgcagtcctatgcgcacttt
acttcgccgattcgtcgttatcctgacctgatgctgcaccgcgccattaagtatctgctg
gcgaaagagcaggggcatcagggcaacaccactgaaaccggtggctaccattattcgatg
gaagagatgctgcaattgggtcagcactgttcgatggcggaacgtcgtgccgacgaagca
acgcgcgatgtgtctgactggctgaagtgtgacttcatgctcgaccaggtaggtaacgtc
tttaaaggcgtaatttccagcgtcactggctttggcttcttcgtccgtctggacgacttg
ttcattgatgggctggtccatgtctcttcgctggacaatgactactatcgctttgaccag
gtagggcaacgcctgatgggtgaatccagcggccagacttatcgcctgggcgatcgcgtg
gaagttcgcgtcgaagcggttaatatggacgagcgcaaaatcgactttagcctgatctcc
agcgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgagaaagcgaaaaaaggcgat
gcaggtaaaaaaggcggcaagcgtcgtcaggtcggtaaaaaggtaaactttgagccagac
agcgccttccgcggtgagaaaaaaacgaagccgaaagcagcgaagaaagacgcgagaaaa
gcgaaaaagccatcggcgaaaacgcagaaaatagctgcagcgaccaaagcgaagcgtgcg
gcgaagaaaaaagtggcagagtga
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