Enterococcus cecorum: NCTC12421_00143
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Entry
NCTC12421_00143 CDS
T07091
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecec
Enterococcus cecorum
Pathway
ecec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC12421_00143 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecec03400
]
NCTC12421_00143 (mfd)
Enzymes [BR:
ecec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC12421_00143 (mfd)
DNA repair and recombination proteins [BR:
ecec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC12421_00143 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SQE53899
LinkDB
All DBs
Position
1:141515..145060
Genome browser
AA seq
1181 aa
AA seq
DB search
MSLARIVGKDPAIASWQAGLQESLSRQLVLGLAGSAKTLALIDTFQQLKKSIVIICPNLF
YANQLADDLRTQIDEVFVFPVDEVLSAEMAFASPEAKSQRVATLNAISSGQKGIYILPVA
SLRKALPAKSTWQDSHLALKIGATLDLEAITQKLTLMGYTREQMLAKPGEFSIRGSIIDI
YPLDQTYPCRIELFDDEIDSLRLFDVETQRSIEKIEEVLISPTSEYVFLPQDFIRGIEKV
EKLLQKRLAVTKHEEDQVRLTEYFQELMERWRHLEATDVVHYYVDLLYEKQVTILDYFSD
DHYFIVDDYARVMESARQLEQETMEWVAQKLEEMRIFSSQEFFREIQPLLTKHKAPTTFF
SLFQKGMGNLRFKAICQVQYRPMQQFFGQMGLLKAEVDRFERQQQTVLFLVSSTTQQEKL
MQAFKEHEIYAVETTPEKIFTNRSQIIVSELQAGFELPESHLVVISEREIFQKVAKKRAR
RQNITNAERLKSYNELKVGDYVVHANHGIGKYLGLQTLEVDGVHQDYMTIQYQNDDKLFI
PVTQLNLIQKYVASESKQPKINKLGGSEWTKTKRKVAKKIEDIADDLIELYAKREAQKGY
AYLPDDGYQREFEDAFAYSETPDQLKSAAEIKKDMEKAKPMDRLLVGDVGFGKTEVALRA
AFKAIKESKQVAFLVPTTILAQQHYETILERFEGFPVNVGLLSRFRTKKQQNETIEQLKH
GQIDIIVGTHRLLSKDVTFSDLGLIVIDEEQRFGVRHKERLKQLRTQVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPANRYPIQTYVMEYNAGAIREGIMREMARGGQVFYLYNRVES
IESKVAELQALVPDARIAFAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN
TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLAEAVNRKQGKNTQLEKTMVEID
LGLDAYLPTSYIEDERQKIEIYKRIRELDSQEALDELQDDLLDRFGEYPDEVAHLLAVGE
LKMNAERSLVEAVKKQGLAVKITLSKVGTQQYVVQDLFKALTATKLKANMNQAKDKMEIT
LSLTPKMPAMVWLMELNQFMQALRDIKYEKQVAQKQTDVQN
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagcaagaatcgtcggaaaagatccggccattgcgtcttggcaagcaggatta
caagaaagcttatcgcgtcaactggtcttagggttagcaggttcggccaagactttagct
ttaatcgatacatttcaacagctaaaaaaatcaattgtgatcatctgtcctaacttgttt
tatgccaaccagttagccgatgatttacgtacgcagatagatgaagtgtttgttttccca
gtggatgaagtattatctgcggagatggcttttgcgtcccctgaagcgaaaagtcagcgt
gtcgctacgttaaatgcgattagctcagggcaaaaaggaatttatattttgccggttgca
agtttaagaaaagctttgccagcaaaaagtacttggcaagatagtcatctcgctttaaaa
atcggggcaaccttggatttagaagctatcacgcaaaaattaactttaatgggctataca
agagagcaaatgttagccaaaccgggtgaatttagtattcgtggcagcattattgatatt
tatccgcttgaccagacatatccatgccgtatcgaattatttgatgatgagattgattct
ttacgtttatttgatgtagaaacccaacgttcgattgaaaagattgaggaagtcttgatt
tcgccgacgagtgagtatgtatttcttccgcaagattttatccgcggaattgaaaaagta
gagaagttattacaaaagcgtttggccgtaaccaagcatgaagaagatcaagtgcgttta
accgagtatttccaagagttgatggaacgctggcgccatttggaagccactgatgtcgtg
cattactatgtcgatttactttacgaaaagcaagtcacgattttagattactttagcgat
gatcattattttatcgtggatgactatgcccgtgtaatggaatcagcccgtcagttagag
caagaaacgatggaatgggtagcccaaaaattagaagaaatgcgcattttttcaagccaa
gaatttttcagagagattcaacccctcttaaccaaacacaaggcgccaactacctttttc
tccctttttcaaaaaggaatggggaatttgcgcttcaaggcgatttgtcaggtacaatac
cgtccgatgcagcaattctttggacaaatgggcttgttgaaggcagaagtagaccgcttt
gaacgccaacaacaaaccgttctttttttagtcagcagcacgacccaacaagaaaagctg
atgcaagcctttaaagagcacgaaatttatgcggtagaaaccacaccagagaagattttt
actaaccgtagtcagattattgtttctgaattacaagctggttttgagttgccagagagt
catttggttgtaattagcgagcgtgaaatcttccaaaaagtcgcgaaaaaacgagcacgc
cgtcaaaatattaccaatgctgaacgcttaaagagctataatgaattaaaagtgggcgat
tatgtcgttcatgccaatcacggtatcgggaagtatctagggttgcagactttggaagta
gatggcgttcaccaagattacatgacgattcagtaccaaaatgatgataaattgtttatc
ccggtgacgcagctgaacttaattcaaaaatacgtcgcttcagaatctaagcaacctaag
atcaacaaattaggtggcagcgaatggacaaagacgaagcgtaaagtagccaaaaagatt
gaagacattgccgatgatttaattgaactatatgccaaacgagaagcacaaaaaggttat
gcgtacctaccagatgatggctatcaacgagaatttgaagatgcttttgcttattcagag
acaccagaccagttgaagagtgccgctgaaatcaaaaaagatatggaaaaagctaaacca
atggatcgcttgttggtaggtgatgtcggttttggtaagacagaagtagccttgcgtgca
gcctttaaagcaattaaagaaagtaagcaggtcgccttcttagtgcctactacgattttg
gcacagcaacactacgagacgattttggaacgttttgaaggatttccagtaaatgttggc
ttgctgagtcgttttagaaccaaaaagcaacaaaacgaaaccatcgaacagcttaaacat
ggacaaattgacattatcgttggcacccatcgtttgctttctaaagacgtgacttttagt
gatttaggtctgatagtcattgatgaggaacaacgctttggagtccgtcataaagaacgc
ttgaaacaattgcgtacccaagtggatgtattaaccttaactgcaactcctattccgcga
actttgcatatgtcgatgttaggggtgcgtgatttatcagtgattgagacgccacctgcc
aatcgctatcctattcaaacttatgtgatggagtataatgccggggcgattcgtgaaggc
attatgcgtgagatggctcgaggtggacaggtcttttatctatataatcgggtggagagt
atcgaaagcaaagtagcagaactccaagctttagttcctgatgctcggattgcctttgcg
catggacagatgacagaagttcagctagaaaatacgctatttgactttattgaagggcaa
tacgatattttggtcacgacgacgattattgaaactggggtcgatattccaaatgctaat
acgttatttgtcgaaaatgcggattatatggggctttctaccttgtatcaattgcgtggt
cgagtgggccgtagtaatcgtgtagcttatgcgtactttatgtatgagcagcaaaaaatc
ttaaatgaagtcagcgaaaaacgactccaagcaatcaaggacttcactgaattaggttct
ggctttaagattgcgatgcgtgacttatcgattcgtggtgcaggaaatctcttaggggcg
caacaacacggctttatcgattcggtcggttttgatatgtattcgcaaatgctagctgaa
gcggtcaatcgcaagcaagggaaaaatacccaattggaaaaaacgatggtcgaaattgat
ttgggcttggatgcgtacttaccaacgagctatattgaagatgaacggcaaaaaatcgag
atttataaacggattcgcgagttggatagtcaagaggcactggacgagttacaagatgat
ttactcgatcgctttggagagtatccagatgaagtcgcgcatttattagcagtcggtgag
ttaaaaatgaatgcagaacgttctttagtagaagctgtgaaaaaacaaggcctagctgtc
aaaattaccttgagcaaagtcggtacccagcaatatgtggtgcaagatttgtttaaagca
ttaacggctaccaaattaaaagcaaatatgaaccaagccaaagataagatggaaatcact
ttaagcttgacaccaaaaatgccggcgatggtctggctgatggaattaaatcaatttatg
caagctttacgtgacataaaatacgaaaaacaagtcgcacaaaaacaaacagatgtgcag
aattga
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