Enterococcus cecorum: NCTC12421_00324
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Entry
NCTC12421_00324 CDS
T07091
Symbol
cshA
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ecec
Enterococcus cecorum
Pathway
ecec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12421_00324 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecec03019
]
NCTC12421_00324 (cshA)
03009 Ribosome biogenesis [BR:
ecec03009
]
NCTC12421_00324 (cshA)
Enzymes [BR:
ecec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12421_00324 (cshA)
Messenger RNA biogenesis [BR:
ecec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12421_00324 (cshA)
Ribosome biogenesis [BR:
ecec03009
]
Prokaryotic type
rRNA helicases
NCTC12421_00324 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
SQE54044
LinkDB
All DBs
Position
1:289814..291319
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AA seq
501 aa
AA seq
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MKFTELNLSEELLSSIERSGFEEATPIQEATIPLALEGRDVIGQAQTGTGKTAAFGLPML
EKIDPNNAQLQGLVIAPTRELAIQTQEELYRLGRDKKIRVQAVYGGADINRQIRQLKNRP
HIVVGTPGRMLDHINRHTLKLSTVQTLVLDEADEMLNMGFLEDIEAIISKVPEQRQTLLF
SATMPPEIKNIGVQFMQNPEHVRIKTKEMTADLIEQFFVRAKEYEKFDIMTRLLDVQIPE
LTIVFGRTKRRVDELAKGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGDLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKMGVSVTFVTPNEMSYLHVIENLTKK
RMTPLRPPTEKEAFKGQLGQAMEEIEAKMDENGLERYMQAAEELLEEYSAQDLAALLVKT
IAKDPADMVPVKITPERPLPPSKKGFNKNNRRGGNSRNRRDYNRDGKYGRNKKDYGKDKR
RENRKNNKSEKKRGFVIRSNH
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaacttaatttatcagaagaattattatcttcaatcgaacgtagcgga
tttgaagaggcaaccccaattcaagaagcgactattcctttagctttagaaggccgcgat
gtcattggtcaggcccaaacaggtaccgggaaaacagctgcctttggtttgccgatgttg
gaaaagattgatccaaacaatgcgcaactacaaggattagtgattgctcccactcgtgaa
ttggctattcaaacccaagaggaattatatcgcttaggtcgtgataagaagattcgtgtg
caagctgtctatggtggtgcggatattaaccgccaaatccgtcagttaaagaatcgtccc
catatcgttgttgggacacctggtcgaatgcttgatcatatcaaccgtcacacattaaaa
ctttcaactgtgcaaactctggtattggatgaagcagatgaaatgttaaacatgggattt
ttagaagatatcgaagcaattatctctaaagtacctgaacaacgtcaaacgctattattc
tcagcaacgatgccaccagaaatcaaaaatatcggtgtgcaattcatgcaaaatccagaa
catgtacggattaaaaccaaagaaatgactgctgatttaatcgagcaattctttgtacgt
gcaaaagaatatgaaaaatttgatatcatgacccgtttattagatgtgcaaatccctgaa
ttaacgattgtatttggtcgtacgaaacgccgtgtggatgaattagcgaaaggtttagaa
gcacgcggctataaagcagagggcattcacggggacttatcccaacaaaaacgaatgagt
gtcttacgtagctttaaaaatggtgatttagatatcctagtcgcaacagatgtggctgct
cgtggattggatatttctggtgtaacccacgtttataactatgatattccacaagatcct
gaaagctatgtccaccgtattggtcgtacaggtcgtgccggtaagatgggtgtgtccgtc
acttttgtcacaccaaacgaaatgagttacttacacgtcatcgaaaacttaaccaaaaaa
cgcatgacaccattacgtccaccaaccgaaaaagaagcgttcaaaggtcaattaggccaa
gcaatggaagaaattgaagcgaaaatggatgaaaatggcttggaacgttacatgcaagcg
gctgaagaattgttagaagaatattctgctcaagatctagcagctttattagtcaaaacg
attgcgaaagacccagctgatatggttccagttaagattactccagaacgtccattacca
cctagcaaaaaaggctttaataaaaataatcgtcgtggtggcaattcacgtaatcgtcgt
gactataaccgcgatggtaaatatggtcgcaataaaaaagactatggtaaagacaaacgc
cgtgaaaatcgcaaaaacaataaaagtgaaaagaaacgtggctttgttatccgtagtaat
cattaa
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