Escherichia coli O157 H7 EC4115 (EHEC): ECH74115_1419
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Entry
ECH74115_1419 CDS
T00778
Symbol
csgD
Name
(GenBank) transcriptional regulator CsgD
KO
K04333
LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
Organism
ecf
Escherichia coli O157:H7 EC4115 (EHEC)
Pathway
ecf02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ecf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
ECH74115_1419 (csgD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecf03000
]
ECH74115_1419 (csgD)
Transcription factors [BR:
ecf03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
ECH74115_1419 (csgD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GerE
VpsT-like_REC
Sigma70_r4_2
HTH_24
HTH_40
HTH_23
Mcm-like_N
RNA_binding
DUF1799
Motif
Other DBs
NCBI-ProteinID:
ACI35292
LinkDB
All DBs
Position
complement(1405272..1405922)
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AA seq
216 aa
AA seq
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MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM
MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNG
LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL
FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaaccttct
ttgcaggcgacagctctcttgcagcaccttaaacaatcgctggcaattacaggaaaatta
cataatattcaacgttctctggacgatatctcttcaggctctattattcttctggatatg
atggaagcggataaaaagcttatccattattggcaggatactttgagcaggaaaaacaac
aatatcaaaatattgttgctaaatacgcctgaagattacccgtaccgcgacattgaaaac
tggcctcatatcaacggcgttttttatgccatggaggatcaagaacgcgttgtcaatgga
ttgcaaggcgtcctgcgcggcgaatgctactttacgcaaaagcttgccagttacctgatt
acacattctggtaactatcgttataacagcacggaatcagccctccttactcatcgggaa
aaagagatcctgaataagctgcgtatcggcgcgtctaataacgagatcgctcgttcgttg
ttcatcagcgaaaatacggttaaaacgcatctttataatcttttcaagaagatagccgta
aaaaaccggacacaagcggtttcctgggcaaacgataacctcaggcgataa
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