Escherichia coli O127 H6 E2348/69 (EPEC): E2348C_1551
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Entry
E2348C_1551 CDS
T00796
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecg
Escherichia coli O127:H6 E2348/69 (EPEC)
Brite
KEGG Orthology (KO) [BR:
ecg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecg03019
]
E2348C_1551 (hrpA)
Enzymes [BR:
ecg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E2348C_1551 (hrpA)
Messenger RNA biogenesis [BR:
ecg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E2348C_1551 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CAS09099
UniProt:
B7URG2
LinkDB
All DBs
Position
1596501..1600346
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDHAAGKVLLREAERPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPADY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDEMLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELIIALIKSLPKPVRRNFV
PAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAIDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEVRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccatgcggcaggg
aaagtcctgctgcgtgaagcggaacgaccggaaattacttacccggacaatttgccggtt
agtcagaaaaagcaggacatactcgaagcgattcgtgaccaccaggtggtgatcgtcgcc
ggggaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggagctgggtcgc
gggattaaagggctgatcggccatacccagccgcgtcggctggcggcgcgaacggtggcg
aaccgtattgcggaagagctaaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgtcagtgataacacgatggtcaagctgatgaccgacggtatcctgctg
gcagagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcg
cacgaacgcagcctgaatatcgattttctcctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgc
tatcgcccgattgttgaagaagccgatgataccgagcgcgatcagttgcaggcgattttt
gacgccgtagatgaactgagccaggaaagccctggcgacattctgatctttatgagcggc
gagcgagaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaa
atcttgccgctttatgcgcggctttccaacagcgaacagaaccgcgtgttccagtcgcac
agcgggcgacgcattgtactggcgaccaacgtcgcggaaacctcgctgaccgtaccgggt
attaaatacgttatcgacccaggtacagcgcgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgagccaatttcgcaggcttcagctaatcagcgtaaaggccgc
tgcggtcgtgtgtcagaagggatctgtattcgtctctattccgaagacgatttcctctcg
cgcccggagtttaccgacccagaaattctacgtactaacctggcctcggttattttgcag
atgaccgcactgggcttgggcgatatcgccgcattcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagaactgggtgcgatcaccacggatgaa
caggccagcgcctataaactgacgccgcttggtcgccagctctcgcagttgcctgtcgac
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatg
attatcacgtctgcgctctccattcaggatccgcgtgagcgtccgatggataaacagcag
gcatctgacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctcgcgtttgtg
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttcaaacgccttccgtcgc
ctgtgtcgtactgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggattat
cgcgaaattcacattgcgttgctgaccggtttgctttcgcatattggtatgaaagatgcc
gataaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggt
ttattcaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tggggacgcattgctgcgcggatcgacccggaatgggtggagccagttgctcagcatttg
attaaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccag
atcgatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactgg
cagacgcgtcacgcattcttccgtgaaaacctgaaactacgggcggaagtagaagagctg
gaacacaaatcacgtcgccgcgatattctggttgatgacgaaatgctgtttgagttctac
gaccagcgcatcagccacgatgtgatttccgcacgtcacttcgacagctggtggaaaaaa
gtcagccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggg
gcggaaaaaatcagcaagctggattatccgaacttctggcatcagggcaatctcaagctg
cgtttgagttatcagtttgagccgggggcagatgctgacggagtgaccgtacatattccg
ctgccgctgcttaaccaggttgaggagagtgggtttgagtggcagatccccggtctgcgt
cgtgagctgatcatcgccctgattaaatcgctgccgaagccggtacgccgtaattttgtg
cccgcgccaaactacgccgaagcgtttttaggccgcgtcacaccgctggaattgccgttg
ctcgacagccttgaacgagagttacggcggatgactggcgtcaccgttgaccgcgaagac
tggcactgggatcaggtgcccgatcacctgaaaatcactttccgcgtggtggatgacaaa
aacaagaagctaaaagaagggcgctcattacaggatctgaaagacgccctgaaaggcaaa
gtgcaggaaacgctgtctgccgtggcggatgacggtatcgagcagagcggtttacatatc
tggagttttggtcaacttccggaaagctacgagcagaagcgcggcaactacaaagtgaag
gcgtggccggcgctggtggatgagcgtgacagcgtagcgatcaaactgtttgataacccg
ctggaacagaagcaggcaatgtggaacggtcttcgccgtttactgctgctaaatattcca
tcgccgatcaagtacttgcacgaaaagctgccaaacaaagccaagctggggctgtacttt
aacccgtatggcaaagtgctggagctgatcgatgactgtatctcctgcggtgtggatcaa
ctgatcgatgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaa
aaagtccgcgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatc
ctcactgcggtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcg
ctggggctttctgacattaaagcgcagatgggcgggctggtgtatcgcggttttgtcact
ggtaacggcttcaaacgactgggcgacacgctgcgttatttgcaggcgattgaaaaacga
ctggaaaaactggcgattgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactaccgcctgcacgtcgtgaggatgaa
gacgtgaaagaggtccgctggatgatagaagagctgcgcgttagttacttcgctcaacaa
cttggcacgccttatccgatttcggataagcgtattttgcaggcgatggagcagattagc
ggttaa
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integrated database retrieval system
