Escherichia coli O127 H6 E2348/69 (EPEC): E2348C_3523
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Entry
E2348C_3523 CDS
T00796
Symbol
csrD
Name
(GenBank) conserved inner membrane protein
KO
K18765
RNase E specificity factor CsrD
Organism
ecg
Escherichia coli O127:H6 E2348/69 (EPEC)
Brite
KEGG Orthology (KO) [BR:
ecg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecg03019
]
E2348C_3523 (csrD)
Messenger RNA biogenesis [BR:
ecg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E2348C_3523 (csrD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
Motif
Other DBs
NCBI-ProteinID:
CAS11071
UniProt:
B7UJY4
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All DBs
Position
complement(3670795..3672735)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVAAAIDTHLLSNDFST
LRPQITELMMSADIVRVDLLHGDKQVYTLTRNGSYRPVGTNDLFRELSVPLIKHPGMSLR
LVYQDPMGNYFHSLMTTAPLTGAIGFIILMLFLAVRWLQRQLAGQELLETRATRILNGER
GSNVLGTIYEWPPRTSSALDTLLCEIQNAREQHSRLDTLIRSYAAQDMKTGLNNRLFFDN
QLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFSLTNLLSTFMMRYPGAL
LARYHRSDFAALLPHRTLKEAESIASQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDT
EQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRRRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQV
YATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagattaacgacgaaattttcggcctttgtcacgctgctcaccgggttaacaattttt
gtgactttgctgggctgttcgctaagtttctacaacgccattcagtataagtttagtcat
cgtgttcaggcggtggcggcggcgattgatacccacctactgtcgaatgacttcagcaca
ttaaggccacaaattaccgaattaatgatgtcggcagatatcgttcgtgtagacctgctc
catggtgataagcaggtttataccctgaccagaaatggtagttatcgtccggttggcacc
aacgatctgtttcgtgaactgagcgttccattgataaagcatccggggatgtcgctgcgt
ctggtttatcaggatccgatgggcaactatttccattctttaatgactaccgcgccgctc
acgggggcgattggctttatcattcttatgctcttcctggcggtacgctggttacaacgg
caacttgccgggcaagaattgctggaaacccgggctactcgtatcttaaacggtgagcgt
ggctctaatgtgttgggaaccatctatgaatggccgcccagaaccagcagtgcgctggat
acgctgctttgtgaaattcagaacgcacgcgaacaacacagccgtcttgatactctgatc
cgctcttatgccgcccaggacatgaaaaccggcctcaataaccgactctttttcgataat
cagttagcaacgttactggaagatcaagagaaagtaggtacccacggaatcgtgatgatg
attcgtctgccggatttcaatatgttgagtgatacctgggggcacagccaggttgaagaa
cagttcttctctctgacgaatctgctatcgacatttatgatgcgctaccctggcgcactg
ctggcgcgttaccaccgcagtgattttgctgcgttgttaccgcaccggacgttaaaagag
gcagagagcatcgccagtcagttaatcaaagccgtcgataccttgccgaacaataaaatg
ctcgatcgcgacgatatgatccacattggtatctgtgcctggcgtagtggtcaggatacc
gagcaggtaatggaacatgcagagtctgccacgcgtaatgcgggattgcagggcggcaat
agctgggctatttacgatgactcgttgcctgaaaaaggacgcggtaatgttcgctggcgt
acgcttatcgagcaaatgctcagtcgcggcggcccgcgcctttatcaaaaaccggcggtt
actcgcgaaggccaggttcatcatcgtgaactcatgtgccgcatcttcgatggtaatgaa
gaggttagttcggcggagtatatgccgatggtcttgcagtttggtttatcggaagagtat
gaccgcctgcaaatcagccgtcttattccactattgcgttactggccagaggaaaatctg
gcgattcaggttaccgttgagtcgctgattcgcccgcgttttcagcgttggctgcgcgat
acgttaatgcaatgtgaaaaatcgcaacgaagacgcataattattgaacttgcagaggcc
gatgttggtcaacatatcagtcgcttacaacctgttattcgtttagtgaatgctttaggg
gtacgggtagccgtcaaccaggctggtttgacgctggtaagcaccagctggatcaaagaa
cttaatgttgagttactcaagctccatccggggctggtcagaaacattgagaagcgaacg
gagaaccagctgctggttcaaagcctggtggaagcctgctccgggaccagcacccaggtt
tacgccaccggcgtgcgttcgcgaagcgagtggcagaccctgattcagcgcggtgttaca
ggtgggcaaggggattttttcgcgtcctcacagccacttgatactaacgtgaaaaaatat
tcacaaagatactcggtttaa
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