Escherichia coli O127 H6 E2348/69 (EPEC): E2348C_3665
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Entry
E2348C_3665 CDS
T00796
Symbol
rtcB
Name
(GenBank) predicted protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ecg
Escherichia coli O127:H6 E2348/69 (EPEC)
Brite
KEGG Orthology (KO) [BR:
ecg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecg03016
]
E2348C_3665 (rtcB)
Enzymes [BR:
ecg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E2348C_3665 (rtcB)
Transfer RNA biogenesis [BR:
ecg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E2348C_3665 (rtcB)
Prokaryotic type
tRNA splicing ligases
E2348C_3665 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CAS11213
UniProt:
B7UKC5
LinkDB
All DBs
Position
complement(3806482..3807708)
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AA seq
408 aa
AA seq
DB search
MNYELLTTENVPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQAIEAAVPHGRTTGRCKRDK
GAWEKPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ
LFASLNRDAMMENVVTALQSVTQKTVRQPQTLAMEEINCHHNYVQKEQHFSEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattactgaccactgaaaatgtcccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcgcgtcagcaactgataaatacggcgaagatgccgtttattttc
aaacatattgcggtaatgcctgatgtacatctgggtaaaggttccaccattggtagcgtg
atcccaaccaaaggagcgattattccggcggcggtgggggtagatatcggttgtggaatg
aacgcgctgcgtaccgcgttaacggcggctgacctgcctgaaaacctggcggagctgcgt
caggcgattgaagctgccgtgccgcatgggcgtaccacaggccgttgtaaacgtgataaa
ggcgcatgggaaaaaccgcctgttaacgtcgatgcgaaatgggctgagcttgaagccggt
tatcagtggttaacgcaaaaatatccgcgtttccttaataccaataactataaacacctg
ggaacgctgggaacgggtaaccactttattgaaatttgccttgatgagtcggatcaggtg
tggattatgctgcactccggttcacgcggaattggtaatgccatcgggacttactttatc
gatctggcgcaaaaagagatgcaggaaacacttgaaacgttgccatcgcgtgacctggcg
tactttatggaaggtacggaatattttgacgattacctgaaagcggtggcctgggcgcag
ctttttgccagccttaaccgcgatgcgatgatggaaaacgtggtaacggcgttgcagagc
gttacgcagaaaacggtaagacagccacaaacgctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagcactttagcgaagagatctatgtgacgcgtaaaggc
gcggtgtctgcgcgtgctggtcaatatggaattattcccggttcgatgggggcgaaaagc
tttattgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggtaatgagccgtactaaagcgaaaaaactgttcagcgtggaagatcaaattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaatcccgatggcgtat
aaagatattgatgcggtgatggcggcacaaagcgatctggtggaagttatctataccctg
cgtcaggtggtgtgcgtaaaaggataa
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