Ehrlichia chaffeensis Arkansas: ECH_0966
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Entry
ECH_0966 CDS
T00328
Name
(GenBank) metallo-beta-lactamase family, beta-CASP subfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ech
Ehrlichia chaffeensis Arkansas
Pathway
ech03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ech00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECH_0966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ech03019
]
ECH_0966
Messenger RNA biogenesis [BR:
ech03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECH_0966
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
RNase_J_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ABD45297
UniProt:
Q2GFN0
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Position
989839..991461
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AA seq
540 aa
AA seq
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MNTDDLLFTPLGGVGQIGMNVNLYHLNGKWIIIDFGAGFADDNMPGIDMIVADISFIKKN
RKNLLGIVLTHAHEDHIGGIQYLWNDLQCPIYATKFTAALLQAKLKEYPFRINITEIDIT
KKLNLGPFTLEFINLTHSIPEMNAIALHTEKGIVVHTGDWKLDDNPIIGPVSNTQRLKEL
GDEGVLALVCDSTNIFTKNKSGSESDLEKSIFNIIKNCNQKVAVSLFASNIARIYTIVNI
ATKLGRKVAILGKSLIRIIQAAQDSGYLQDIPEFININQANKLPNDQVLLLCTGCQGEEL
AATAKLANNSHPFTKLDNGDTIIFSSKIIPGNEKRIYSVFNKFVNMGVNVITEFMEHVHV
SGHPSKSEVSTMYSLVRPKLSIPVHGEYIHMHEHAKVAKQCNVEKAIIVHPGDVISLTKK
QKINSVKAGYFGVDGNFLHHPKGNVISMRKKMRDAGIIIITLVLNNKKELLKEPRIFAPG
VLDHSNSQAILKKVSSKISSELYSRKINNIRQYVENTVFNALKYDIKNKPFIEVQLEYIN
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgaatactgatgatttattgttcacacccttaggcggagtcggacaaataggcatgaat
gtcaatttatatcacttaaatggtaaatggataattattgatttcggagcaggatttgct
gatgacaatatgccaggaatagacatgattgttgctgatattagttttatcaaaaaaaat
agaaaaaacttgcttggtatagtattaacacatgctcatgaagatcacataggaggcata
caatatctgtggaacgatttgcaatgcccaatatatgcaacaaaattcacagctgcctta
ttacaagcaaaattgaaagaatatccatttagaatcaatattacagaaatcgacatcaca
aaaaaattaaatcttggcccttttactcttgagtttataaatttgacacactccatacca
gaaatgaatgcaattgcattacacactgaaaaaggaatagtagtacatacaggagattgg
aagttagatgacaacccaattattggtcctgtatcaaatacacaaagattaaaagaatta
ggagacgaaggggttttagcacttgtatgtgattcaacaaatatatttactaaaaataaa
tcaggatctgagagtgatttagaaaaaagtatatttaatataataaaaaactgtaatcaa
aaagttgcagtatctttatttgcatctaatattgcacgaatctataccatagtaaacatt
gcaacaaaattaggtagaaaagtagcaatactgggaaaatctcttataagaattatacaa
gctgcacaagacagtgggtatttgcaagatataccagagttcatcaatatcaatcaagca
aataaactcccaaatgatcaagtcttgcttctttgtactggttgccaaggtgaagagcta
gcagcaactgccaaacttgctaataattctcatccattcactaaattagataatggagat
actattatcttctcttccaagatcattccaggaaatgagaaacggatatatagtgtattc
aacaaattcgttaacatgggagttaatgttattacagaatttatggaacatgtacacgta
tcagggcacccttcaaaaagtgaagtatctactatgtattcattagtaaggcctaaatta
tccatccctgtacatggagaatacatacatatgcacgaacatgcaaaagttgcaaaacaa
tgcaacgtagaaaaagcgataatagttcacccaggagatgtaataagcctcacaaaaaaa
caaaaaattaactctgtcaaagctggatactttggagttgatggcaatttcttacaccat
cccaaaggcaatgtcatatctatgcgaaaaaagatgagagacgcagggataattataata
acactagttttaaacaacaaaaaagaattattaaaagaaccaaggatttttgctccagga
gtgctagatcattctaatagtcaagcaattctcaaaaaagtctcatctaaaataagtagc
gagctttattctagaaaaataaacaacatacgacaatacgtagaaaatacagttttcaat
gctttaaaatatgacatcaaaaacaaaccatttattgaagtacagctagaatacataaat
tag
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