Enterobacter chengduensis: FY206_02635
Help
Entry
FY206_02635 CDS
T06229
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
echg
Enterobacter chengduensis
Pathway
echg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
echg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FY206_02635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
echg03019
]
FY206_02635
03016 Transfer RNA biogenesis [BR:
echg03016
]
FY206_02635
Enzymes [BR:
echg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FY206_02635
Messenger RNA biogenesis [BR:
echg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FY206_02635
Transfer RNA biogenesis [BR:
echg03016
]
Prokaryotic type
tRNA degradation factors
FY206_02635
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
QEL34382
LinkDB
All DBs
Position
538972..541416
Genome browser
AA seq
814 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPKA
VEEQIESLREEVPEESKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
NKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKGGNGKPGGGKRRQAGKKVNFEPDSAFRGEKKQKPKA
AKKEARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaacgcgaagccgaaaaatacgcgaatcctattcccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgtagaattaaacattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gcgatggagcgtgacgggcagctggtctttacccgccgccagtgctacgcgctgccagaa
cgcctcgatctgctgaaagggaccgtcattggtcaccgcgatggcttcggcttcctgcgc
gtggaaggccgtaaagacgatctctacctctcatctgaacagatgaaaatgtgcatccac
ggcgaccagatcctggcgcagccgctgggcgctgaccgtaaaggccgccgcgaagcgcgc
gtggtccgcgtgctggtgccaaaaaccagccagattgttggccgctattttaccgacgcg
ggcgtgggctttgtggtgccggacgacagccgtctgagcttcgacatcctgattccgcct
gaagaggtaatgggcgcgcgcatgggttttgtggtggtggtggaactcacccagcgccca
acccgccgcaccaaagcggtcggtaaaatcgtggaagtcttaggcgataacatgggcacc
ggcatggccgttgatatggcgctgcgcacccacgagattccgtacatctggccgaaagcg
gttgaagagcagatcgaaagcctgcgcgaagaagtgccggaagagtctaaagcgggccgc
gtggatctgcgctccctgccgctggtcacgatcgacggtgaagatgctcgcgacttcgat
gacgccgtttactgcgagaaaaaacgcggtggcggctggcgtctgtgggtagcgattgca
gacgtcagctactatgttcgtccgcacactccgctggataacgaagcccgcagccgcggt
acctcggtctacttcccgtcgcaggttgtgccgatgctgccggaagtgctgtctaacggc
ctgtgctccctgaacccgcaggttgaccgcctctgtatggtttgcgagatgaccatctcc
aacaaagggcgcttaaccggatacaaattctacgaagcggtgatgagctcgcacgcgcgt
ctgacctacaccaaggtctggcatatgctgcagggcgaccaggatctgcgcgaacagtac
gcgccgctggtcaaacacatcgaagaactgcataacctctacaaaacgctggatcaggcg
cgcgaagagcgcggcgggatctcgtttgagagcgaagaagcgaaattcattttcaacgca
gaacgccgcatcgagcgtatcgagcagacccagcgtaacgatgcgcacaagctgatcgaa
gagtgtatgatcctggcgaacatctcggcggcacgtttcgttgagaaagccaaagagcct
gcgctgttccgtattcacgataaaccgtcgacggaagccatcaccgcgttccgctccgtg
ctggctgaactgggtctggaactgcctggcggcaacaagccggagccgcgcgattacgcc
gagctgctggagtccattagcgaccgtcctgacgcagaaatgctgcagacgatgctgctg
cgctctatgaagcaggcgatttacgatccggaaaaccggggacacttcggcctcgcgctg
cagtcttacgcccactttacgtcgccgattcgtcgttatcctgacctctctctgcaccgt
gcgatcaagtatctgctggcgcaggagcagggccataaaggaaacacgactgaaaccggt
ggctaccactattcgatggaagagatgctgcagctgggtcagcactgttccatgaccgaa
cgccgtgccgatgaagccacgcgcgacgtggcggactggctgaagtgtgactttatgctc
gaccaggtgggtaacgtcttcaaaggcgtgattgccagcgtgaccggctttggcttcttc
gtgcgtctggacgaactgttcatcgacggtctggtgcacgtctccagcctggataacgat
tattaccgcttcgatcaggttggccagcgcctgattggcgaatcgggcggccagacctat
cgtctgggcgaccgtgtcgaagtgaaggtcgaagccgtgaatatggacgaccgtaaaatc
gacttcagcctgatctccagcgagcgtgcgccgcgcaacgtcggtaaaaccgagcgtgaa
cgggcgaaaaaaggcggaaacggtaagccgggcggcggtaaacgtcgtcaggctggcaag
aaggtgaacttcgagccggacagcgcgttccgcggcgagaagaaacagaagccgaaggcg
gcgaagaaagaagcccgttcagcgaagaaaccttccgcgaagacgcagaaaatagcggcc
gccaccaaagcgaagcgcgcagcgaagaaaaagcaggcggagtaa
DBGET
integrated database retrieval system
