Enterobacter chengduensis: FY206_09885
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Entry
FY206_09885 CDS
T06229
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
echg
Enterobacter chengduensis
Pathway
echg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
echg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FY206_09885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
echg03019
]
FY206_09885
03009 Ribosome biogenesis [BR:
echg03009
]
FY206_09885
Enzymes [BR:
echg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FY206_09885
Messenger RNA biogenesis [BR:
echg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FY206_09885
Ribosome biogenesis [BR:
echg03009
]
Prokaryotic type
rRNA processing factors
FY206_09885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QEL35708
LinkDB
All DBs
Position
complement(2006774..2009899)
Genome browser
AA seq
1041 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQME
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
AALEKPAAKPAAQKPEAAVAKAQPTEQPGLLSRFFGALKKMFAGEEEVQPEQPKEEPKAA
KPERQQDRRKRQNNRRDRNDRSDRNERNDRRDNRDNRSENGEGREQREDNRRNRREKQQQ
NVEDREIRQQAGDESEKSKQRDDQQPRRERNRRRNDEKRQAQQEVKNLNREEPVEQQDGE
QEERTQVMPRRKQRQLAQKVRFASEAAEESTLVAVESSESTTGTQVAKVDLPAVVENSAE
QDDNGENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTIACASPEMASGK
VWIRYPVARPEQVVDEQPVAEEVIAPVAAVEEVVAEAATVVEPQVVEAEAPQPVDVETAH
PEVIAAPVEAAPQLIAEEDVAVAEEIAAEAEPVAAVEEAAETVVEAVPEEVAQDVEIEVE
PVVEEPKAPEVKPEPVVSAPAAAHVATAPMTRAPAPDYVPEAPRHSDWVRPAFTFDGKGA
AGGHSATHQATAPATRPQSVE
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcatggtttcctccctctgaaagaaatctcccgcgaatatttccctgca
aactacaacgcccatggccgcccaaacatcaaagatgtgctgcgcgaaggtcaggaagtt
atcgttcagattgataaagaagagcgtggcaacaaaggtgccgcactgactacctttatc
agcctggcagggagctatctggtgctgatgcctaacaacccgcgtgcgggtggcatatct
cgccgtatcgaaggggatgaccgtaccgagctgaaggaagcgctggcaagccttgagctg
ccggacggcatggggcttatcgtgcgtaccgcaggcgttggcaaatcagccgaagcgctg
cagtgggacctgagcttccgtctgaagcactgggaagctatccagaaagctgcagaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgtgatcgtgcgtgccttccgtgac
tacctgcgtcaggacatcggcgagattctgatcgacaacccgaaagtgcttgagctggct
cgccagcacattgccgcgctgggtcgtccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactaccagatcgaatcccagattgagtccgccttccag
cgtgaagtgcgcctgccttccggcggctctatcgttatcgactccactgaagcactgacc
gctatcgacatcaactccgctcgcgccacacgcggcggtgacatcgaagagacggccttc
aataccaacctcgaagccgctgatgaaatcgcccgccagctccgcctgcgcgatctgggt
ggtctgattgttatcgacttcatcgacatgacccctgttcgccaccagcgtgcggttgaa
aaccgcctgcgtgaagcggtgcgtcaggatcgcgcgcgtatccagattagccatatctcc
cgctttggcctgctggaaatgtcccgtcagcgtctgagcccgtcgctgggtgagtccagc
catcacgtttgtccgcgctgttccggcaccggtaccgtgcgcgataacgaatctctgtct
ctctccatcctgcgtctgattgaagaagaagcgctgaaggagaataccaaagaggttcac
gcgattgttcctgtgccgattgcctcctacctgctgaacgaaaaacgtgcagcggtcagc
gccattgaggcacgtcagggcggcgttcgctgcatcatcgtgccaaacgatcagatggaa
accccgcactatcacgtgctgcgcgtccgtaaaggcgaagagacgtccacgctcagctac
ctgctgccgaagctgcatgaagaagagatggccctgccttccgatgaagagccagccgag
cgcaaactgccagagcagcctgcgttagcgaccttcatcatgcctgaagcaccgccggaa
gcggcactggaaaaacctgcggccaagcctgcggcacaaaaaccagaagccgcagtggca
aaagcccagccgacagaacagccgggtctgctgagccgcttctttggcgcgctgaagaag
atgtttgctggcgaagaagaggttcagccagagcagccgaaagaagagccaaaagcggcc
aagccagagcgtcagcaggaccgtcgtaagcgtcagaacaaccgccgcgatcgtaacgac
cgcagcgaccgtaatgagcgcaatgaccgtcgtgacaaccgtgacaatcgctctgagaat
ggcgaaggccgcgagcagcgcgaagacaaccgtcgcaaccgtcgcgagaaacagcagcag
aatgttgaagatcgtgaaattcgccagcaggcgggcgatgagtctgagaagagcaaacag
cgtgacgaccagcagccgcgccgtgaacgcaaccgtcgccgtaacgacgagaagcgtcag
gcacagcaggaagtcaaaaacctgaaccgcgaagagcctgttgaacagcaggacggcgag
caggaagaacgtactcaggttatgccgcgccgcaagcagcgccagcttgctcagaaagtt
cgcttcgcctcagaagcagccgaagagtcaacccttgtcgcggttgaatccagcgagagc
acaaccggtacgcaggtggcgaaagttgacctgcctgcggtcgttgaaaacagcgcagag
caggatgacaacggtgaaaaccgtgataacgccggcatgccgcgccgttcacgccgttcc
ccacgtcatctgcgcgtcagcggccagcgccgtcgtcgctatcgtgacgagcgttacccg
actcagtctccaatgccgctgaccatcgcctgtgcttcgccagagatggcctccggtaaa
gtctggatccgctacccggtagcgcgcccggagcaggttgtagatgaacagcctgtagcc
gaagaggtgattgcccctgtcgccgcggttgaagaagtggtggcagaagcggcaaccgtg
gttgaacctcaggttgttgaagctgaagcaccgcagccggtggatgtcgaaaccgctcat
ccggaagtgattgccgcgccggttgaagccgctccgcagcttatcgctgaagaagatgtc
gcggtagctgaagaaattgctgcagaggctgaacctgttgccgcagtggaagaggccgct
gaaaccgtcgtcgaagcggtacctgaagaagtcgctcaggacgttgagattgaggttgaa
ccggttgttgaagaaccgaaagcgccagaagtgaagcctgaaccggttgtttctgcaccg
gccgctgcccacgtggcgacagcgccaatgacgcgcgctccggcgccggattacgtgcct
gaagccccgcgtcacagcgactgggtgcgcccggccttcaccttcgacggtaaaggcgct
gcaggcggccacagtgcaacgcatcaggcaactgcaccggcaacccgtccgcagtccgtc
gaataa
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