Echinicola soli: FKX85_00835
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Entry
FKX85_00835 CDS
T06084
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
echi
Echinicola soli
Brite
KEGG Orthology (KO) [BR:
echi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
echi03009
]
FKX85_00835 (rlmD)
Enzymes [BR:
echi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FKX85_00835 (rlmD)
Ribosome biogenesis [BR:
echi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FKX85_00835 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
TRM5-TYW2_MTfase
Methyltransf_15
PCMT
N6_N4_Mtase
Methyltransf_11
PrmA
Cons_hypoth95
UPF0020
DOT1
Methyltransf_12
Peptidase_C74
Motif
Other DBs
NCBI-ProteinID:
QDH77666
UniProt:
A0A514CCX1
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All DBs
Position
179829..181238
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AA seq
469 aa
AA seq
DB search
MSRKMKNKVLKNLTIERIAAEGKSVTHYEGKVVFVQHVAPGDVVDVRIRRGKSSFMEGEA
IHIHEYSKDRAEPFCSHFGVCGGCKWQHINYDLQMEYKRQQVVDQFQRIAKVPIPEVLPI
IGSADTRYYRNKLDFTFSNNRWLTREEIDSGKEFERNALGFHIPKRFDKIVDVEHCYLQG
GVSNEVRNALRDFALEKGLTFFDMIKQEGLLRNLIIRTSVTDETMVIVQFGEDNPEQVDQ
VMTFLSERFPDLTSLLYIINLKKNETFHDQDIHTFMGRDYIIEEMEGLKFRVGPKSFYQT
NSKQAYELYKVAREFADLNGDEVVYDLYTGTGTIANFVAKKAKQVIGIEYVEAAIEDAKL
NAKENDLDNTLFYAGDMKDMLTDEFIASHAAPDVIITDPPRAGMHEDVVSMLLKLAAPKI
VYVSCNPATQARDIALLGDKYNVDIVQPVDMFPQTYHVENVVLLTLKTG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaaagatgaaaaataaggttttaaaaaaccttacgatagagcggattgccgct
gaaggcaaaagtgtcacccactacgaaggaaaagtggtatttgtccaacatgtggcacca
ggagatgtggtagacgtcaggatcaggcgtggaaaaagtagctttatggaaggtgaggcc
atccacatccatgaatattccaaagaccgggcagaacctttctgctcgcattttggcgtt
tgcggaggatgtaaatggcagcacatcaactatgaccttcagatggaatataagcggcag
caggtcgtggaccagtttcagcgaattgccaaggtacccattccagaagtcctgcccatc
ataggctctgccgatacgaggtattatcgtaacaaacttgatttcactttctccaataac
aggtggctcaccagagaggaaattgattctggtaaggagtttgaaagaaatgcccttggt
tttcatattcccaagcgattcgataaaatcgtagatgtcgagcattgctatctacaagga
ggggtgtccaatgaggtcagaaatgcacttagggatttcgcccttgagaaggggctgact
ttctttgatatgatcaagcaagaggggctcctccgaaacttgatcatcagaaccagtgtc
accgacgagaccatggtaatcgtgcagtttggggaagataatcccgaacaggttgatcag
gtgatgactttcctttcagagcgatttcccgacctcacctcactgctatacatcatcaac
ctaaaaaagaacgagactttccatgatcaggatatccatacttttatgggcagggattat
attatcgaagagatggaaggactgaaattcagggttggccctaagtcgttctatcaaacc
aattcaaaacaagcctatgagctgtataaagtggcacgggaatttgctgatcttaatggg
gatgaagtcgtgtatgatctctacacaggcaccggaacgatcgccaatttcgtggcaaaa
aaagccaaacaggtcatcggcattgaatacgttgaagcagcgatcgaagacgccaagcta
aacgctaaggagaatgaccttgacaacaccctgttttatgcaggagacatgaaggacatg
cttactgatgagtttatcgcttcacatgcagcaccggatgtgatcatcaccgacccccct
cgagcggggatgcatgaagatgtggtcagtatgcttttaaaactggcggctccaaaaatc
gtatacgtcagctgtaaccctgccacacaggcccgggacattgcgcttttgggtgataaa
tataatgtggatatcgtacagcccgtggacatgtttccacagacctatcatgtggaaaac
gtggtactgctgacattgaagactgggtaa
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