Echinicola soli: FKX85_01280
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Entry
FKX85_01280 CDS
T06084
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
echi
Echinicola soli
Pathway
echi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
echi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FKX85_01280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
echi03021
]
FKX85_01280 (rpoC)
03400 DNA repair and recombination proteins [BR:
echi03400
]
FKX85_01280 (rpoC)
Enzymes [BR:
echi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FKX85_01280 (rpoC)
Transcription machinery [BR:
echi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FKX85_01280 (rpoC)
DNA repair and recombination proteins [BR:
echi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FKX85_01280 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
BSH_RND
Peptidase_M23
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QDH77750
UniProt:
A0A514CDA2
LinkDB
All DBs
Position
complement(261722..266038)
Genome browser
AA seq
1438 aa
AA seq
DB search
MAFRKNKKLNNDFSRVTISLASPESILDSSHGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIVYYERYAVINPGVKAEDGLQYLDFLTEDEYLDIMDKLPKENQMLDD
DDPNKFIAKMGAEAIEMLLSRLDLDDLSYSLRHQAATDTSQQRKAEALKRLKVVEAFRDA
RTRIENRPEWMVVRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGHEAILEASTLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGKRSTEEEVVP
GEGMTFYGEEDVIIALNEKVISQHAFIKCKVKVRDENGELVDKIVETVAGRLIFNQFVPE
EVGYVNELLTKKKLQQIIAEVVKICGIARSAQFLDDIKHLGFQMAYAGGLSMGLNDVIIP
SDKDPLITKAKDEVDQVWNNYLMGLITDNERYNQVIDIWTRTNSNLTNILMKQMEEDKQG
FNAIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVSEEDCGTLRGLVVQALKDNDEI
VEPLSERIVGRVSVHDVVDPISDEVIIQSGEEITDELARKVDESAVEEVEIRSVLTCESR
RGVCTKCYGRNLTTGSVVQNGESVGVIAAQSIGEPGTQLTLRTFHVGGTASNISVEASIN
AKFEGVVEFEEEFRFINTTNKDGDPVAVVMGRSGEIKINDAKSGKTLVSNHVPYGAILNV
KDGQKIGKGDSLCTWDPYNAVILSEFDGDVSFESIIEGVTFKEVADDQTGYKEKVIIDTK
DKTKNPAVVVNYGDETKSYNIPVGAHLAVEEGDKVKAGQILVKIPRSVGKTRDITGGLPR
VTELFEARNPSNPAVVSEIDGVVTYGGIKRGNREIFIESKDGVKKRYMVSLSKHILVQEN
DFIRAGEPLSDGAITPNDILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIEVIVSQMM
QKVEILDAGDTGFLQGQIVDKWAFREENDNILDKKVVMDAGDSSTLKAGMIITSRRLRDE
NSSLKRKDLKLVQVRDAETAVSKPTLQGITAASLGTESFISAASFQETTKVLSEAAIRGK
RDELLGLKENVIVGHLIPAGTGQRDFQHIIVGSKEEYEKLSSSTDKERESRKSKETVK
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagaaaaaataaaaaactaaacaacgacttttccagagtcactattagtttg
gcttctccggaatccatcctggatagctctcatggtgaggtgacacagccagaaaccatc
aactacagaacgtataagcctgaaatgggcggtcttttctgtgagcggatttttggccct
gtcaaagactgggaatgtcattgtggaaagtacaagcgcataagatataaaggtattatt
tgtgacagatgtggggttgaggttaccgagaagaaggtgcgacgtgaaagaatggggcac
attgaactggtggtccctgtggcgcacatctggtatttcaaatccctgccgaacaaaatc
ggctacttgctagggttacctaccaagaaactggatcaaatcgtatactacgagagatac
gctgttattaatcctggtgtcaaggcagaagatggccttcagtaccttgattttctaaca
gaagacgagtatttggatatcatggataagcttccaaaagaaaaccaaatgcttgatgat
gatgatcctaataagttcatcgcaaaaatgggagccgaagctattgagatgctattgtct
cgattggatctagatgatctgtcttatagccttcgtcaccaagctgccacagatacttcg
cagcagcgtaaagctgaggccttgaagcgtctgaaggtggtggaagcttttagggatgca
aggaccagaatcgaaaaccgtcccgaatggatggtcgtgagaatggtacctgtgattcca
ccagagcttcgtccattggtgccattggatggtggacgatttgctacttctgatttgaat
gacctatacagaagggtgattatccgaaacaaccgtctgaagagactaattgacatcaaa
gcgccagaagtaatccttcgtaacgagaagcgtatgcttcaggaagcggtggattccctt
tttgataattccagaaaggtaaatgcagtaaggtctgacggaaacagggcactgaagtca
ctttccgacatgctgaaaggtaagcaagggcgtttccgtcaaaacttgcttggtaagcgt
gtggattattctggacgttctgtcatcgtggtagggcctgaactgaaacttcacgagtgc
ggtttgcccaaaaatatggcagcggagcttttcaagcctttcatcatcagaaagctgatc
gaaagaggcattgtgaagacggtgaaatccgctaagaagattgtagaccgtaaagatccg
gtggtatgggacatccttgaaaatgtattgaaaggacaccctgtattgcttaaccgggct
cctacgctgcacagattgggtattcaagctttccagccgaaattgatcgaaggaaaagct
atccagttgcatccattggtgtgtactgcctttaatgccgactttgacggtgaccaaatg
gccgttcacgtgccacttggccatgaggctattttggaggcatctaccttgatgctttct
tcacacaatatccttaacccagctaatggggcaccaattaccgtgccttcacaggatatg
gtgttgggactgtattatgtaaccaaagggaaaagatccaccgaagaagaggttgttcct
ggagaagggatgacattctacggcgaggaggatgtgatcatcgccttaaacgaaaaagtt
atttcacaacacgctttcattaagtgtaaagtgaaagtaagggatgagaacggagaattg
gtagataagatcgttgaaaccgttgctggtagattgatctttaaccagtttgttccagaa
gaagtaggttatgtaaatgagctattgaccaaaaagaagcttcagcaaattattgccgaa
gtagtgaaaatatgtggtattgcacgtagtgcccagttcttggatgatatcaagcacctt
ggattccagatggcctatgccggcggactttccatgggattgaacgatgtgatcattcca
agtgacaaggatccattgatcaccaaagcaaaagacgaagtggatcaggtatggaataac
tacctgatggggctgatcactgataacgagcgatacaaccaggtaattgatatctggaca
agaaccaactccaatctgacaaatatccttatgaagcagatggaggaggataaacaaggc
ttcaatgctatctacatgatgatgcactccggcgcgaggggttcaagagaacagattcgt
cagctgggaggtatgcggggattgatggccaaaccacagaaaaaccttcaagggtctgta
ggagagatcatcgaaaaccctattctgtccaactttaaggaagggctggatgtattggag
tactttatctctacgcacggtgcgcgtaaggggcttgccgatacggcgcttaaaaccgcc
gatgccggttacctgaccagaagactggtggatgtggcgcaggatgtgatcgtgtccgaa
gaggattgcggtacgctaagaggcctggtcgtacaggcacttaaagataatgacgagatc
gtagagccactttctgaacgtatagtgggcagggtttctgtgcacgatgtggttgatccg
atttctgatgaggttatcattcagtctggagaagaaatcactgacgagcttgccagaaaa
gtagatgagtctgcagtagaagaggtggagatcagatcagtattgacctgtgaatccaga
agaggcgtttgtaccaaatgctacggtcgtaacctgaccactggtagtgttgtgcaaaat
ggtgaatccgtaggggttattgcagcccaatccattggtgaaccaggtacacaacttacc
ttgagaacattccacgtgggtggtacagcatctaacatttccgtagaggcaagtatcaat
gcgaagtttgaaggtgtagtggaatttgaagaagaattcagatttatcaatactaccaat
aaggacggagatccagtggcagtcgtgatgggccgatccggtgagatcaagatcaacgat
gccaaatctggcaaaacactggtttctaaccacgtcccttatggtgctatccttaacgta
aaagatggtcagaagatcggtaaaggtgattctctatgtacatgggatccatataatgcc
gtgattctatccgaatttgacggagatgtttcctttgagtccatcatcgaaggggtgacc
tttaaggaggtggccgatgatcagactggatacaaggagaaagtaatcatcgataccaag
gataagaccaagaacccagctgtagtggtaaactatggtgacgaaaccaagagctacaac
attccagtaggagcacacttggctgtagaagagggcgacaaagtgaaagcgggacagatc
cttgtgaagattcctcgttcggtaggtaaaactcgggatatcacgggtggtcttcctaga
gtaacagaactgttcgaagcacgtaacccgtccaatccggcggtagtttctgaaatcgac
ggtgtggtgacttatggaggcatcaagcgtggtaacagagaaatcttcatcgaatctaag
gacggcgtgaagaagcgttatatggtatccctgtccaagcacatcctggttcaggaaaat
gactttatcagagctggcgagccactttctgatggagctatcacgccaaatgatatccta
tccatcaaaggaccaacagctgttcaggaatacttggttaatgagatccaggaagtatac
cgtctgcagggtgtgaagatcaacgataaacacatcgaagtgatcgtaagccaaatgatg
cagaaagtagagatccttgatgctggtgatactggattccttcaaggacagatcgtagat
aagtgggcattcagagaggaaaatgataatattcttgataagaaggtcgtaatggacgct
ggtgattcatccactctaaaagctggtatgatcattacctccagaaggctacgtgatgaa
aactccagcttgaagcgtaaagaccttaagcttgttcaggtaagagatgcggaaactgcc
gtatccaagccgacacttcaaggtattacagcagcatctttgggtactgaaagctttata
tcagcagcctccttccaggagactaccaaggtcttgagtgaagcagctatcagaggtaag
cgagatgagttgttgggcttgaaagaaaacgtaattgttgggcacttaatcccagccggt
acaggacagcgagacttccagcacatcatcgttggttccaaagaggagtacgagaagcta
tcttcttccactgacaaggagagagagtcccgtaagtctaaggagactgtaaagtaa
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integrated database retrieval system
