Echinicola soli: FKX85_14430
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Entry
FKX85_14430 CDS
T06084
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
echi
Echinicola soli
Pathway
echi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
echi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FKX85_14430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
echi03019
]
FKX85_14430
03009 Ribosome biogenesis [BR:
echi03009
]
FKX85_14430
Enzymes [BR:
echi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FKX85_14430
Messenger RNA biogenesis [BR:
echi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FKX85_14430
Ribosome biogenesis [BR:
echi03009
]
Prokaryotic type
rRNA helicases
FKX85_14430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
Mnd1
Cas3-like_C_2
TFIIE_alpha
Motif
Other DBs
NCBI-ProteinID:
QDH80170
UniProt:
A0A514CK52
LinkDB
All DBs
Position
complement(3646448..3648151)
Genome browser
AA seq
567 aa
AA seq
DB search
MENEILFADLGISDEILQAVEGMGYTQPSEIQAQSIPLMLDGRDVIGQAQTGTGKTASFG
IPIIDRVDSSSRHPQALILCPTRELAVQVEGEITKLAKHKKGVFSTAIYGGEAIDRQIRT
LKKGVQIVVGTPGRIMDHMKRGTLKLDTVQTIVLDEADEMLDMGFREDIEMVLSQMPEIR
QTIFFSATMAKPIMDLTRKYQTNPEIVKILRKELTVENISQVYYEVKPPLKMELITRLVN
VHQFNLGVVFCNTKRATDEVTEGLIARGISAEALHGDLSQAQRDKVMNKFRKGHCAMLVA
TDVAARGIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFITGRKDIFRLKDL
EKYIKTSLTKMNPPSVAEMVDQKKDQLVKDVTKELSKEEDNQFFEAALGQLLAEGLSMDQ
IALGLVKLQMGKSIQELSDMNFDLNLGRERDRGERGSRGRDRFERGAKKGRGERPGARKG
GRERGKREANMARLFLNLGKKDRIRPNDIVGAIAGEAGISGRLIGGIDIFDNFSFVDVPT
KDASHVISVMKRNTIKGKSVNMELSKD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgagattttattcgcagacttgggaatttcagacgaaattcttcaagcagtg
gaaggtatgggctatacccaaccttctgaaattcaagcacaatcaattcctttgatgcta
gatggccgtgatgtcattggccaggcacaaacaggaactggaaaaactgcttctttcggg
attccgatcatcgatcgcgtagacagcagcagcaggcacccacaggcattgatcttatgc
cctaccagggaactcgcagtacaggtagaaggtgaaatcaccaaacttgccaagcacaaa
aagggtgttttcagtacagcaatctatggtggtgaagctatcgaccgtcaaatccggaca
cttaaaaaaggtgtacagatcgtcgtaggtacaccaggtagaattatggaccacatgaaa
cgtggcaccctgaaacttgatactgttcaaaccattgtactggatgaagcagacgaaatg
cttgacatgggcttcagggaagacattgaaatggttcttagccaaatgcctgagattaga
cagacgatcttcttctcagcaactatggccaagcctatcatggacttgaccagaaaatat
caaaccaatcctgaaatcgtcaagatcctccgtaaggaactgactgttgagaacatttca
caggtttattacgaagtcaagcctccattgaagatggaactgatcacgagactggtcaat
gtacatcaatttaatcttggcgtggttttctgtaataccaaaagggctacagacgaagtt
accgaaggcttgatcgctagaggaatctctgctgaagcactacacggagacttgtcccag
gcacagcgtgacaaggtgatgaacaaattcagaaaaggtcactgcgcaatgttggtagct
actgatgtagccgcgagaggaatcgatgtagacaatgtggaagtggtatttaattatgac
ctcccgctggatgaagagtactatgttcaccgtatcggtagaacaggcagagctggccgt
tcaggtatggcaatctctttcattacaggaagaaaggatattttcaggcttaaagatctg
gaaaaatacatcaaaacatccctgaccaaaatgaatccgccttctgtcgctgaaatggtt
gaccagaaaaaagatcaattggtaaaagatgttacaaaagaactttccaaagaggaagac
aaccagttttttgaagcagcattaggtcagctacttgccgaaggattaagcatggatcaa
atcgctcttgggttggtaaaactgcaaatgggcaaatcaattcaggaactttccgacatg
aacttcgacctaaacctaggccgtgaaagggatagaggagaaagaggaagccgaggaaga
gaccgcttcgaaagaggtgctaaaaaaggtcgaggagaacgtccaggtgcccgaaaaggt
ggccgtgaaagaggaaaaagagaagcaaatatggccaggcttttccttaatctgggtaaa
aaagacagaatcagaccgaatgatatcgtaggagccatagctggtgaagcaggaatttct
ggtcgtctgatcggtggtatagacatctttgataatttctcttttgtggacgtacctacc
aaagatgcaagtcatgtcattagtgtcatgaaaaggaataccattaaaggtaaatctgtc
aacatggaactctcaaaagattaa
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