Ehrlichia chaffeensis West Paces: ECHWP_0207
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Entry
ECHWP_0207 CDS
T03365
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
echp
Ehrlichia chaffeensis West Paces
Pathway
echp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
echp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECHWP_0207 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
echp03400
]
ECHWP_0207 (mfd)
Enzymes [BR:
echp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECHWP_0207 (mfd)
DNA repair and recombination proteins [BR:
echp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECHWP_0207 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHX10416
LinkDB
All DBs
Position
complement(223066..226470)
Genome browser
AA seq
1134 aa
AA seq
DB search
MNNINKIFNIPQTLEPLVIIKMYIKKLIHSAIYIVNQETQLHNLASIFKFYVPNLEIIIF
PAWNSIPYKKNSPHNSVMAERIKTLYSLITRHNDNPYIIISTINAITQKVLHQNIILQSV
LKITSLQNITKNHIEDYLTNHGYSQYSIVQDIGEFATYNNIIDIFPTTYKNPIRIHLNNN
LIQSIHYFNRQTQLIDNNSSLNEVVIYPTSEIIKQKKNIDIFSKTYKTKPNQDQNLLNTI
ISGKKHIGEENFLPLFYKEELQNIFNYISQNTTLIFNDKLINEIKEYNNQIYLNYRSQLS
YQVPPPQLYVDSEEFKIITKQFHKTIFSQSDNTSNNSAYTDRNIHTSSFNITEKIQNVPN
FKTLVQNKQIDIFEILTQYIKTTCHTKKLIIACYSTGSLEYIQNRLRTLNIKLCKIENYQ
EICSSYNIAILPIYHSFISKYTIVIAEHDLLYKQETTNKSNISNIISNDTNLDIGDIVIH
KDYGIGKIVALETTKVFDSYHDFIKIEYYNNDKLFLPVENINLISKYGQQNVNVTLDKLG
STSWQQRKTKIKNHIKKIAKELLTIEAARRLSTGKSFFPDENYKHFCNEFSYTETEDQLQ
AIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVASQNYQVAIIVPTTLLCRQHFI
VFTERFKKFPNIKIKQLSKIVARSEIKKTKESLSCGQVHIIIGTHAILAQDVTFANLSLL
IIDEEQQFGVKQKELLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLSLIKTPPKNRLAV
TTYTTYYEETIIKDAIIREHNRGGRVFYVCPQISNIKSISDKIRKLVPEIKMNTAHGQLS
PTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHNADMFGLAQLYQLKGRVGRS
STKGFAYFILSEKATNKSAIKLEIIQSIDSINSGFNLSLHDMDIRGFGNLVGEEQSGNIK
DIGIELYQQMLEEELNIYSEYPKDLDHINININVNIRIPEHYIQDIGLRMRVYKKIGSLK
TKEDIDNYYIELTNKFGKLPNEVENLLNTIYIKQLCANIGIYEVEQIKNSILLKIDSNTT
LKQKILNYFINNPLTFKIQNNSILMLINNSSNCIISFIIHHISKINLLNKKAIL
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgaataatattaataaaatcttcaatattccacaaacgctagaaccacttgtcataata
aaaatgtatataaaaaaactaattcattctgcaatatatatagtcaatcaagaaacacaa
ctacataatctagcatcaatatttaagttttatgttccaaatcttgaaataatcatattt
cctgcatggaattcaataccatataaaaaaaattctccacataattcagttatggcagaa
agaattaaaactctatattccctaatcactagacataatgataatccctatattattatt
tcaacaattaatgcaattactcaaaaagtattacaccaaaatatcatattacaatcagta
ttaaaaattacatctctacagaatattacaaaaaatcatatagaagattacttaaccaat
cacggatacagtcaatactcaatagtacaagatataggtgaatttgccacttacaacaac
atcattgacatttttcctacaacttataaaaatcccataaggattcatttaaataataat
cttatacaatcaattcactatttcaatcgccaaacacaattaatagataataactcttct
ttaaatgaggttgttatttatcccacttctgaaataataaaacaaaaaaaaaatatagat
attttttctaaaacctataaaacaaaaccaaaccaagatcaaaacctattaaacacaata
atctctggaaagaaacacataggagaagaaaatttcttgcctttattttataaagaagaa
ttacaaaatatttttaactacatatcacaaaacacaacattaatatttaacgataagctt
ataaatgaaataaaagaatataataatcagatatacctaaattacagatctcaactatcc
taccaagtgcctccacctcaactttacgttgattctgaagaatttaaaattataactaaa
cagtttcataaaactatattctcacaatctgacaacactagtaataattcagcctatacc
gatagaaatatacatacttcttccttcaacattacagaaaagatacaaaacgtcccaaat
tttaaaacattagtacaaaacaaacaaatcgacatatttgaaatattgacacaatatatc
aaaactacatgtcacacaaaaaaattaataatagcttgttactctactggctctttagaa
tatatccaaaatagacttagaacattaaatatcaaactatgcaaaatagaaaactatcag
gaaatatgctcttcatataatattgctatattaccaatatatcacagctttatctcaaaa
tatactattgtcatagcagaacacgatctattatataaacaagaaacaactaataaaagt
aacatttcaaatattattagcaatgatactaacctagatattggagatatagtaatacac
aaagactatggtattgggaaaatagtagcacttgaaactactaaagtatttgatagttat
catgatttcatcaaaatagagtactataacaacgacaaactattcttacctgtagaaaat
attaatcttatatccaagtatggacaacaaaatgtcaatgttacccttgataaactaggc
agtacatcatggcaacaacgtaaaactaaaataaaaaaccatatcaaaaaaattgcaaaa
gaattattaactatagaagcagcaagaagactctctactggcaaatcatttttccctgat
gaaaattataaacacttctgtaatgaattttcttatactgaaacagaagatcaattacaa
gccataaaagacatggaacatgatctatcaagtggtaaaataatgaatagattaatttgc
ggagacgttggctttggaaaaacggaaatagctttacgagcagcattcttagtagcaagt
caaaactaccaagtagcaattatagtaccaacaactctactgtgcaggcaacattttatt
gtttttactgaaagattcaaaaaatttcctaatattaaaatcaaacaattatctaaaatt
gttgcgagatccgaaataaaaaaaactaaagaaagtttatcatgtggacaagtacatata
ataataggaacacatgccatattagcacaggacgttacgtttgctaacttaagcctatta
attatagatgaagaacaacaatttggagtaaagcaaaaagaattactaaaaaaaatcaaa
acaaacgttcatgtaatttcactatctgcaactccaataccacggacactgtacatgtca
ctatgtggaataaaagatttgagtttaataaaaacaccaccaaaaaatagattagcagtt
acaacttatacaacatattatgaagaaactataataaaagatgctataatacgagagcat
aatagaggcggtagagtattttatgtttgtccacaaattagtaatataaaaagcatcagc
gacaagataagaaaattagtaccagaaataaaaatgaacactgcccatggacaactttcc
cctacccaacttgacacaataatgaacgatttttttgatggcaaattcacaatattactt
actacatcaattatagaatgtggattagatatcccttttgccaatacaatcataatacac
aatgccgatatgtttggattagctcaactctaccaattaaaaggaagagtaggacgtagc
agtaccaagggttttgcatattttatattatctgaaaaagcaaccaataaatctgctata
aaactggagataatacaatcaatagattctataaattcaggatttaatttatcattacat
gacatggatatcagaggatttggtaatttagtgggagaagaacaatcaggtaacataaaa
gatataggcattgaactataccaacaaatgttagaagaagaacttaacatttatagtgaa
tatcctaaagatcttgaccatataaatatcaatatcaatgttaatataagaattcctgag
cattacattcaagatataggattaagaatgcgagtatacaaaaaaattggcagtcttaaa
acaaaagaagacatagataattactatatagagttaaccaataagtttggtaaattgcca
aacgaagtagaaaacttattgaacaccatatatataaaacaactgtgtgcaaatattggc
atttatgaagtcgaacaaataaaaaacagcatccttttaaaaatagatagcaatacaact
cttaaacaaaaaattcttaattattttatcaataaccctctaacttttaagatacaaaac
aatagtatacttatgctaattaacaacagttccaattgcattataagttttattatacac
cacattagcaaaataaacctattaaacaagaaagcaatattataa
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