Ehrlichia chaffeensis Osceola: ECHOSC_0683
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Entry
ECHOSC_0683 CDS
T03191
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
echs
Ehrlichia chaffeensis Osceola
Brite
KEGG Orthology (KO) [BR:
echs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ECHOSC_0683 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
echs03021
]
ECHOSC_0683 (rpoD)
Transcription machinery [BR:
echs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ECHOSC_0683 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_ner
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
VMAP-M5
Motif
Other DBs
NCBI-ProteinID:
AHX07110
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Position
758803..760671
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AA seq
622 aa
AA seq
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MKDLQTDKELLRTLVSKGLKQGFVTFNDINDVFSDYVLSSDNIDETISMLQDSGINVLEQ
SDEDEANSIIEENRIKDEMDEDDVSDTSIKSWDFGQTDDPIRMYLCEMSSVELLSREGEI
EIAKKIKSEKVNMLRSLVESPIVLRTFMSWRDDLVNEQIMLRDLIDLDANYRYEFPEKFS
DTDDASVLGYDKDLMDEPDEDPDIPEDEDEENISINASILEMENALLPKVVSILDSVIAS
AEKILELKKQYQGKINQDIEKQYNDLHDSIWEMIYQIKLSNSAVLSITQQIYSLSKSIAA
EEAKIISLAESYGIQRKDFLDAYNTNSVLQKKGTSPQWDNMLLNEESNIVSMYSKIKLLS
GENNLTEFKALVTKIQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNI
GLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQM
LHEMGREPTLEELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVK
PEDAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQ
IEAKALRKLRHPSRARKLRGFF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctacaaacagataaagaattactcagaactcttgtgagtaagggactcaaa
caaggatttgttacatttaacgatatcaacgatgttttttctgactacgtgctgtcatct
gacaacatagatgaaactatatcaatgcttcaggattcaggtattaatgttcttgaacaa
agtgatgaagacgaggcaaatagcataatagaagaaaacagaatcaaagatgaaatggac
gaagatgatgtatcagacaccagtataaaatcttgggattttggacaaacagatgaccct
atacgcatgtacctatgtgaaatgagttctgttgaattactatctcgtgaaggagaaatt
gaaattgccaaaaagatcaaatcagaaaaagtaaatatgctcaggtcactagtagaatcc
ccaatagtattacgtacatttatgtcatggagggatgacttagtaaatgaacaaataatg
ttaagagatttaatagatttagatgcaaattacaggtatgaatttcctgaaaaattttct
gacactgatgatgctagtgttttaggttatgataaagatttaatggatgaacctgatgaa
gatccagatataccagaagatgaagatgaagaaaacatttcaataaatgcttcaatatta
gaaatggaaaatgcattgctacccaaagtagtaagcatcttagattcagtaattgcatca
gcagaaaaaattttagaactcaaaaaacaatatcaaggtaaaattaaccaagatattgaa
aaacaatacaatgacttacacgatagcatatgggaaatgatatatcaaattaaacttagt
aattccgcagtcctatcaatcacacaacaaatatatagcttaagtaaatcaatagcagca
gaagaggcaaaaattatttcccttgcagaaagctatggtatacaacgcaaagacttctta
gatgcatataatactaattctgtattgcaaaaaaaaggcacttctcctcaatgggataac
atgttactcaatgaagagagtaatatagtaagtatgtacagtaaaattaagctactgtct
ggagaaaataaccttaccgaattcaaagcattagtcacaaaaatacaaaagcacgaacgt
gcagcaaatcaagcaaagcaagaaatgataaaagcaaatctaaggttagtagtatcgatt
gcaaaaaaatattcaaatcgaggtttacagtttctagatttagtacaagaagggaatatt
ggcttaatgaaagcagtagataaatttgattacaaacgtggatataaattctcaacttat
gcaacgtggtgggtgaggcaagctatcactagagcaatagcagatcaggcacgaactatt
agaattcctgtacacatgattgaaacagtaaataaaatcaatcgcacactaagacaaatg
ctacacgaaatgggtagagaaccaacattagaggaattatcagcaagattaaacattaat
gtagataagatacgtaaggtaatgaaaatagttaaagaccccgtaagcttagaaagcccc
ataggagatgatgacagtagtacctttggtgattgcatagaagataaacgtgcagtaaag
ccagaagatgcagcagtacttgcagacttacgagaaataactacaaaagtattatcaaca
ttaacaccaaaagaagagagaatcttacgtatgcggtttggaataggtaaaggtggaaaa
gaccataccttagaagaagtaggaaaactattcaatgtaacaagagaacgtatacgacaa
attgaagcaaaagctttacgtaaactacgtcatccaagtcgtgcaagaaagcttagagga
tttttctaa
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