Enterobacter chuandaensis: RQP59_02420
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Entry
RQP59_02420 CDS
T11050
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
echu Enterobacter chuandaensis
Pathway
echu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
echu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RQP59_02420 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
echu03019
]
RQP59_02420 (rnr)
03016 Transfer RNA biogenesis [BR:
echu03016
]
RQP59_02420 (rnr)
Enzymes [BR:
echu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RQP59_02420 (rnr)
Messenger RNA biogenesis [BR:
echu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RQP59_02420 (rnr)
Transfer RNA biogenesis [BR:
echu03016
]
Prokaryotic type
tRNA degradation factors
RQP59_02420 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
WNS38442
UniProt:
A0AA96M9Y4
LinkDB
All DBs
Position
503013..505454
Genome browser
AA seq
813 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQISGLREEVPEESKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
NKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKGGNGKASGKRRQAGKKVNFEPDSAFRGEKKQKPKAA
KKEARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatcctttccaggaacgcgaagccgaaaaatacgcgaatcctattcccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaacattgaaggcgaagagcaaattgaagcccttcgccgccgcctgcgc
gcgatggagcgtgacgggcagctggtctttacccgccgccagtgctacgcgctgccagaa
cgcctcgatctgctgaaagggaccgttattggtcaccgtgacggtttcggcttcctgcgc
gtggaaggccgtaaagacgacctgtacctctcatctgaacagatgaagatgtgtatccac
ggcgaccagatcctggcgcagccgctgggtgctgaccgtaagggccgccgcgaagcgcgc
gtggttcgcgtgctggtgccgaaaaccagccagattgtgggccgctactttaccgatgcg
ggcgtgggcttcgtggtgccggacgacagccgtctgagcttcgacatcctcatcccgcct
gaagaggtgatgggcgcacgcatgggcttcgtggtggtagtggaactcacccagcgccca
acccgtcgcaccaaagcggtcggaaaaatcgtcgaagtgctgggcgacaacatgggcacc
ggcatggccgttgatatggcgctgcgcacgcatgaaattccttacgtctggccgaaagcg
gttgaagaacaaatttccggcctccgcgaagaggtgcctgaagaatctaaagcgggccgt
gtagatctccgcgatctgccgctggtgacgatcgatggtgaagacgcccgtgacttcgat
gatgctgtctactgcgagaaaaaacgcggtggcggctggcgtctgtgggtcgcgatcgcg
gatgtcagctattacgttcgcccgcatacgccgctggataacgaggcgcgcagccgtggt
acctcggtttacttcccgtctcaggtaataccgatgctgccggaagtgctctccaacggc
ctgtgctccctgaacccgcaggttgaccgtctctgtatggtttgtgagatgaccatctcc
aacaaagggcgcttaacgggctacaaattctacgaagcggtgatgagctctcacgcgcgt
ctgacctacaccaaggtctggcatatgctgcagggcgatcaggatctgcgcgagcaatat
gcgccgctggtcaaacatattgaagagctacataacctctataaaacgctggatcaggcg
cgcgaagagcgcggcgggatctcgtttgagagtgaagaagcgaagttcatcttcaacgcc
gagcgtcgtattgaacgtatcgagcagacccagcgtaatgatgcgcacaagctgatcgaa
gagtgtatgatcctggcgaacatctcggcggcgcgtttcgttgagaaagcgaaagagcct
gcgctgttccgtattcacgataagccgtctacggaagccatcaccgcgttccgttctgtg
ctggctgaactcggtctggagctgccgggcggcaataagcctgagccgcgcgattacgcc
gagctgctggaatccattagcgatcgtcctgacgcagaaatgctgcagacgatgctgctg
cgctccatgaagcaggcgatttacgatccggaaaaccggggccacttcggcctggcgctg
cagtcttacgcgcactttacctcgccgatccgtcgctatccggatctgtcactgcaccgc
gcgatcaagtatctgctggcgcaggagcagggtcataaagggaacaccaccgaaaccggc
ggctatcactactcgatggaagagatgctgcagctgggtcagcactgctccatgaccgag
cgccgtgctgatgaagccacgcgagacgtagcggactggctgaagtgtgactttatgctg
gaccaggtgggcaacgtctttaagggcgtgattgccagcgtgaccggctttggtttcttc
gttcgtctggacgagctgttcattgacggtctggtgcacgtctccagcctggataacgac
tactaccgcttcgatcaggtcggccagcgcctgattggcgagtctggcggccagacctac
cgtctgggcgaccgcgtggaagtgaaggtggaagccgtgaatatggacgaccgtaaaatc
gacttcagcctgatctccagcgagcgcgcgccgcgtaacgtgggtaaaaccgagcgtgaa
agggcgaaaaaaggcggaaacggcaaagcgagcggtaaacgtcgccaggcgggcaaaaag
gtaaacttcgagccggacagcgcgttccgcggcgagaagaagcagaagccaaaggcggcg
aagaaagaggctcgctcagcgaaaaagccttccgcgaagacgcagaaaattgctgccgca
acaaaagcgaagcgcgcagccaagaaaaagcaggcggagtaa
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