Ehrlichia chaffeensis Saint Vincent: ECHSTV_0370
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Entry
ECHSTV_0370 CDS
T03348
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
echv
Ehrlichia chaffeensis Saint Vincent
Brite
KEGG Orthology (KO) [BR:
echv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ECHSTV_0370 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
echv03021
]
ECHSTV_0370 (rpoD)
Transcription machinery [BR:
echv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ECHSTV_0370 (rpoD)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_ner
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AHX09017
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Position
complement(433192..435060)
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AA seq
622 aa
AA seq
DB search
MKDLQTDKELLRTLVSKGLKQGFVTFNDINDVFSDYVLSSDNIDETISMLQDSGINVLEQ
SDEDEANSIIEENRIKDEMDEDDVSDTSIKSWDFGQTDDPIRMYLCEMSSVELLSREGEI
EIAKKIKSEKVNMLRSLVESPIVLRTFMSWRDDLVNEQIMLRDLIDLDANYRYEFPEKFS
DTDDASVLGYDKDLMDEPDEDPDIPEDEDEENISINASILEMENALLPKVVSILDSVIAS
AEKILELKKQYQGKINQDIEKQYNDLHDSIWEMIYQIKLSNSAVLSITQQIYSLSKSIAA
EEAKIISLAESYGIQRKDFLDAYNTNSVLQKKGTSPQWDNMLLNEESNIVSMYSKIKLLS
GENNLTEFKALVTKIQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNI
GLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQM
LHEMGREPTLEELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVK
PEDAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQ
IEAKALRKLRHPSRARKLRGFF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctacaaacagataaagaattactcagaactcttgtgagtaagggactcaaa
caaggatttgttacatttaacgatatcaacgatgttttttctgactacgtgctgtcatct
gacaacatagatgaaactatatcaatgcttcaggattcaggtattaatgttcttgaacaa
agtgatgaagacgaggcaaatagcataatagaagaaaacagaatcaaagatgaaatggac
gaagatgatgtatcagacaccagtataaaatcttgggattttggacaaacagatgaccct
atacgcatgtacctatgtgaaatgagttctgttgaattactatctcgtgaaggagaaatt
gaaattgccaaaaagatcaaatcagaaaaagtaaatatgctcaggtcactagtagaatcc
ccaatagtattacgtacatttatgtcatggagggatgacttagtaaatgaacaaataatg
ttaagagatttaatagatttagatgcaaattacaggtatgaatttcctgaaaaattttct
gacactgatgatgctagtgttttaggttatgataaagatttaatggatgaacctgatgaa
gatccagatataccagaagatgaagatgaagaaaacatttcaataaatgcttcaatatta
gaaatggaaaatgcattgctacccaaagtagtaagcatcttagattcagtaattgcatca
gcagaaaaaattttagaactcaaaaaacaatatcaaggtaaaattaaccaagatattgaa
aaacaatacaatgacttacacgatagcatatgggaaatgatatatcaaattaaacttagt
aattccgcagtcctatcaatcacacaacaaatatatagcttaagtaaatcaatagcagca
gaagaggcaaaaattatttcccttgcagaaagctatggtatacaacgcaaagacttctta
gatgcatataatactaattctgtattgcaaaaaaaaggcacttctcctcaatgggataac
atgttactcaatgaagagagtaatatagtaagtatgtacagtaaaattaagctactgtct
ggagaaaataaccttaccgaattcaaagcattagtcacaaaaatacaaaagcacgaacgt
gcagcaaatcaagcaaagcaagaaatgataaaagcaaatctaaggttagtagtatcgatt
gcaaaaaaatattcaaatcgaggtttacagtttctagatttagtacaagaagggaatatt
ggcttaatgaaagcagtagataaatttgattacaaacgtggatataaattctcaacttat
gcaacgtggtgggtgaggcaagctatcactagagcaatagcagatcaggcacgaactatt
agaattcctgtacacatgattgaaacagtaaataaaatcaatcgcacactaagacaaatg
ctacacgaaatgggtagagaaccaacattagaggaattatcagcaagattaaacattaat
gtagataagatacgtaaggtaatgaaaatagttaaagaccccgtaagcttagaaagcccc
ataggagatgatgacagtagtacctttggtgattgcatagaagataaacgtgcagtaaag
ccagaagatgcagcagtacttgcagacttacgagaaataactacaaaagtattatcaaca
ttaacaccaaaagaagagagaatcttacgtatgcggtttggaataggtaaaggtggaaaa
gaccataccttagaagaagtaggaaaactattcaatgtaacaagagaacgtatacgacaa
attgaagcaaaagctttacgtaaactacgtcatccaagtcgtgcaagaaagcttagagga
tttttctaa
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