Ehrlichia chaffeensis Wakulla: ECHWAK_0192
Help
Entry
ECHWAK_0192 CDS
T03364
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
echw
Ehrlichia chaffeensis Wakulla
Pathway
echw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
echw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECHWAK_0192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
echw03019
]
ECHWAK_0192
Messenger RNA biogenesis [BR:
echw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECHWAK_0192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
RNase_J_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AHX09400
LinkDB
All DBs
Position
complement(210137..211759)
Genome browser
AA seq
540 aa
AA seq
DB search
MNTDDLLFTPLGGVGQIGMNVNLYHLNGKWIIIDFGAGFADDNMPGIDMIVADISFIKKN
RKNLLGIVLTHAHEDHIGGIQYLWNDLQCPIYATKFTAALLQAKLKEYPFRINITEIDIT
KKLNLGPFTLEFINLTHSIPEMNAIALHTEKGIVVHTGDWKLDDNPIIGPVSNTQRLKEL
GDEGVLALVCDSTNIFTKNKSGSESDLEKSIFNIIKNCNQKVAVSLFASNIARIYTIVNI
ATKLGRKVAILGKSLIRIIQAAQDSGYLQDIPEFININQANKLPNDQVLLLCTGCQGEEL
AATAKLANNSHPFTKLDNGDTIIFSSKIIPGNEKRIYSVFNKFVNMGVNVITEFMEHVHV
SGHPSKSEVSTMYSLVRPKLSIPVHGEYIHMHEHAKVAKQCNVEKAIIVHPGDVISLTKK
QRINSVKAGYFGVDGNFLHHPKGNVISMRKKMRDAGIIIITLVLNNKKELLKEPRIFAPG
VLDHSNSQAILKKVSSKISSELYSRKINNIRQYVENTVFNALKYDIKNKPFIEVQLEYIN
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgaatactgatgatttattgttcacacccttaggcggagtcggacaaataggcatgaat
gtcaatttatatcacttaaatggtaaatggataattattgatttcggagcaggatttgct
gatgacaatatgccaggaatagacatgattgttgctgatattagttttatcaaaaaaaat
agaaaaaacttgcttggtatagtattaacacatgctcatgaagatcacataggaggcata
caatatctgtggaacgatttgcaatgcccaatatatgcaacaaaattcacagctgcctta
ttacaagcaaaattgaaagaatatccatttagaatcaatattacagaaattgacatcaca
aaaaaattaaatcttggcccttttactcttgagtttataaatttgacacactccatacca
gaaatgaatgcaattgcattacacactgaaaaaggaatagtagtacatacaggagattgg
aagttagatgacaacccaattattggtcctgtatcaaatacacaaagattaaaagaatta
ggagacgaaggggttttagcacttgtatgtgattcaacaaatatatttactaaaaataaa
tcaggatctgagagtgatttagaaaaaagtatatttaatataataaaaaactgtaatcaa
aaagttgcagtatctttatttgcatctaatattgcacgaatctataccatagtaaacatt
gcaacaaaattaggtagaaaagtagcaatactgggaaaatctcttataagaattatacaa
gctgcacaagacagtgggtatttgcaagatataccagagttcatcaatatcaatcaagca
aataaactcccaaatgatcaagtcttgcttctttgtactggttgccaaggtgaagagcta
gcagcaactgccaaacttgctaataattctcatccattcactaaattagataatggagat
actattatcttctcttccaagatcattccaggaaatgagaaacggatatatagtgtattc
aacaaattcgttaacatgggagttaatgttattacagaatttatggaacatgtacacgta
tcagggcacccttcaaaaagtgaagtatctactatgtattcattagtaaggcctaagtta
tccatccctgtacatggagaatacatacatatgcacgaacatgcaaaagttgcaaaacaa
tgcaacgtagaaaaagcgataatagttcacccaggagatgtaataagcctcacaaaaaaa
caaagaattaactctgtcaaagctggatactttggagttgatggcaatttcttacaccat
cccaaaggcaatgtcatatctatgcgaaaaaagatgagagacgcagggataattataata
acactagttttaaacaacaaaaaagaattattaaaagaaccaaggatttttgctccagga
gtgctagatcattctaatagtcaagcaattctcaaaaaagtctcatctaaaataagtagc
gagctttattctagaaaaataaacaacatacgacaatacgtagaaaatacagttttcaat
gctttaaaatatgacatcaaaaacaaaccatttattgaagtacagctagaatacataaat
tag
DBGET
integrated database retrieval system
