Escherichia coli O18 K1 H7 UTI89 (UPEC): UTI89_C4779
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Entry
UTI89_C4779 CDS
T00338
Symbol
vacB
Name
(GenBank) putative enzyme
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eci
Escherichia coli O18:K1:H7 UTI89 (UPEC)
Pathway
eci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UTI89_C4779 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eci03019
]
UTI89_C4779 (vacB)
03016 Transfer RNA biogenesis [BR:
eci03016
]
UTI89_C4779 (vacB)
Enzymes [BR:
eci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
UTI89_C4779 (vacB)
Messenger RNA biogenesis [BR:
eci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UTI89_C4779 (vacB)
Transfer RNA biogenesis [BR:
eci03016
]
Prokaryotic type
tRNA degradation factors
UTI89_C4779 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ABE10183
UniProt:
Q1R381
LinkDB
All DBs
Position
4678424..4680907
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AA seq
827 aa
AA seq
DB search
MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHI
EGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD
DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVV
PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI
ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP
QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH
LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA
NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV
ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNV
FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV
EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD
SAFRGEKKPKPKAAKKDARKAKKPSVKTQKIAAATKAKRAAKKKVAE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaaatcttcatcagagatgacaacggaggaaccgagatgtcacaagatcctttc
caggaacgcgaagctgaaaaatacgcgaatcccatccctagtcgggaatttatcctcgaa
catttaaccaaacgtgaaaaaccggccagccgtgatgagctggcggtagaactgcacatt
gaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgcgcgatggagcgcgatggt
caactggtcttcactcgccgtcagtgctatgcgctgccggaacgcctcgacctggtgaaa
ggtaccgttattggccaccgtgatggctacggctttctgcgagttgaagggcgtaaagat
gatttgtatctctccagcgagcagatgaaaacctgcattcatggcgatcaggtgctggct
cagccgctgggcgctgaccgtaaaggtcgtcgtgaagcgcgtattgtccgcgtactggtg
ccaaaaaccagccagattgttggtcgctacttcaccgaagcgggcgtcggctttgtggtt
cctgacgatagccgtctgagcttcgatatcttaatcccgcccgatcagatcatgggcgcg
cggatgggctttgtggtggtggttgaactgactcaacgcccgactcgccgtaccaaagcg
gtgggtaaaatcgtcgaagtgctgggcgacaatatgggcaccggcatggcggttgatatc
gctctgcgtacccatgaaattccgtacatctggccgcaggctgttgagcaacaggttgcc
gggctgaaagaagaagtgccggaagaagcaaaagtgggccgtgtcgatctgcgcgattta
ccgctggtcaccattgatggcgaagacgcccgtgactttgacgatgcagtttactgtgag
aaaaaacgcggcggcggctggcgtttatgggtcgcgattgccgacgtcagctactatgtg
cgtccgccaacgccgctggacagagaagcgcgtaatcgtggtacgtcggtgtacttccct
tcgcaggttatcccgatgctgccggaagtgctctctaacggcctgtgctcgctcaacccg
caggtagaccgcctgtgtatggtgtgcgagatgacggtttcgtcgaaaggccgcctgact
ggctacaaattctacgaagcggtgatgagttctcacgcgcgtctgacctacaccaaagtc
tggcatatactgcaaggcgatcaggatctgcgcgagcagtatgcgccgctggttaagcat
ctcgaagagttacataacctctataaagtgctggataaagcccgtgaagaacgcggtggg
atctcatttgagagcgaagaagcgaagttcattttcaacgctgaacgccgtattgaacgt
atcgaacagactcagcgtaacgacgcccacaagttaattgaagagtgcatgattctggcg
aatatctcggcggcgcgtttcgttgagaaagccaaagaaccggcactgttccgtattcac
gacaagccgagcaccgaagcgattacctctttccgttcagtgctggcggagctggggctg
gaactgccgggcggtaacaagccggaaccgcgcgactatgcagagttactggaatcggtt
gccgatcgtcctgatgcagaaatgctgcaaaccatgcttttgcgctcgatgaaacaggcg
atttacgatccggaaaaccgtggtcacttcggtctggcattgcagtcctatgcgcacttt
acttcgccgattcgtcgttatcctgacctgacgttgcaccgcgccattaaatatctgctg
gcgaaagagcaggggcatcagggcaacaccactgaaaccggcggctaccattattcgatg
gaagagatgctgcaactgggtcagcactgttcgatggcggaacgtcgtgccgatgaagca
acgcgcgatgtgtctgactggctgaagtgtgacttcatgctcgaccaggtaggtaacgtc
tttaaaggcgtaatttccagcgtcactggctttggcttcttcgtccgtctggacgacttg
ttcattgatggtctggtccatgtctcttcgctggacaatgactactatcgctttgatcag
gtagggcaacgcctgatgggtgaatccagcggccagacttatcgcctgggcgatcgcgtg
gaagttcgcgttgaagcggttaatatggacgagcgcaaaatcgactttagcctgatctcc
agcgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgagaaagcgaaaaaaggcgat
gcaggcaaaaaaggcggcaagcggcgtcaggtcggcaaaaaggtcaactttgagccagac
agcgcctttcgcggcgagaaaaaaccgaagccgaaagcagcgaagaaagacgcgagaaaa
gcgaaaaagccatcggtgaaaacgcagaaaatagccgcagcgaccaaagcgaagcgtgcg
gcgaagaaaaaagtggcagagtga
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