Escherichia coli K-12 W3110: JW0058
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Entry
JW0058 CDS
T00068
Symbol
hepA
Name
(GenBank) RNA polymerase-associated helicase protein
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ecj
Escherichia coli K-12 W3110
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecj03021
]
JW0058 (hepA)
Transcription machinery [BR:
ecj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
JW0058 (hepA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAB96627
UniProt:
P60240
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(60358..63264)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD
NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT
EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM
NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattgggacttgga
accgttgtcgcggtggatgcgcgaactgtcactttacttttcccatctactggtgaaaac
cgtctgtacgcacgcagtgattcccccgtgacccgcgtgatgttcaaccctggtgatacc
attaccagccatgacggctggcagatgcaagtcgaagaagtaaaagaagaaaatggcttg
ctgacctatatcggtactcgcctggatactgaagagtccggcgtagccctgcgtgaagtt
ttccttgatagcaaactggtgttcagcaaaccgcaggaccgtctgtttgccgggcagatt
gaccgtatggaccgctttgcgctgcgttatcgcgcgcgtaaatattccagcgaacagttc
cgtatgccgtacagcggcctgcgcggtcagcgtaccagcctgatcccgcatcagctcaac
atcgctcatgatgttggtcgccgccacgcgccgcgcgtcctgctggctgacgaagtgggt
ttagggaaaaccattgaagccgggatgatcctgcatcagcaactgctctctggcgctgct
gaacgtgtgctaattatcgtcccggaaaccttacagcatcagtggctggtagaaatgctg
cgccgtttcaacctgcgctttgcgctatttgatgatgagcgttatgccgaagctcagcac
gatgcttacaacccgtttgacaccgaacagctggtgatttgctcgctggattttgcccgt
cgtagcaaacagcgcctggaacatctctgtgaagccgaatgggacctgctggtggtcgat
gaagcgcatcacctggtgtggagcgaagatgcgccaagccgtgaatatcaggccattgaa
caactggcagagcacgtgccgggcgttctgctgctgaccgcgaccccggaacagctgggg
atggaaagccacttcgcccgtctgcgtctgctggacccgaaccgtttccacgattttgcg
cagttcgttgaagagcagaaaaattatcgtccggttgcggacgccgttgccatgctgctg
gcaggtaacaaactgagcaatgacgaactgaacatgctcggcgagatgatcggcgagcag
gatatcgagccgctgttgcaggcagcaaacagcgacagcgaagatgcccagagcgcccgt
caggagctggtttcgatgctgatggatcgccacggcaccagccgcgtgctgttccgtaac
acgcgtaacggtgtgaaaggattcccgaaacgcgagctgcacaccattaagctgccgcta
ccgacgcagtatcagacggctattaaagtctccggcattatgggcgcacgtaaaagtgcg
gaagatcgtgctcgcgatatgctctacccggagcgtatttatcaggaatttgaaggtgat
aacgccacctggtggaacttcgatccgcgcgttgagtggctgatgggctacctgaccagc
catcgctctcagaaagtgctggtgatctgcgccaaagctgccactgcgctgcaactggag
caggtactgcgcgaacgtgaaggtattcgcgctgcggtgttccacgaaggtatgtcgatt
atcgaacgtgaccgcgctgccgcctggtttgccgaagaagacaccggcgcacaggtactg
ctgtgctcagaaatcggttctgaaggacgtaacttccagttcgccagccacatggtgatg
tttgacctgccattcaacccggatctactggagcagcgtattggtcgtctggatcgtatc
ggccaggcgcacgatattcagatccatgtgccttatctggagaaaaccgctcagtcggtg
ctggtgcgctggtatcacgaaggtctggatgcatttgagcacacctgcccgaccggacgc
actatttacgatagcgtatacaacgatctgattaactatctggcttcaccggatcaaacc
gaaggctttgacgatctgatcaaaaactgccgcgagcaacatgaagcgctgaaagcacag
ctggaacagggtcgtgaccgcctgctggaaatccactccaacggtggcgaaaaagcccag
gcactggcagaaagcattgaagagcaggatgacgataccaacctgatcgccttcgccatg
aacctgttcgatattatcggtatcaatcaggacgatcgcggcgacaacatgatcgtgctg
acgccgtccgatcatatgctggtgccggacttccctggcctgtcggaagatggcatcacc
atcacctttgatcgtgaagtggcgctggcgcgtgaagatgcacagtttattacctgggag
catccgctgatccgcaacggtctggatctgatcctttctggcgataccggtagcagcacg
atttcactgttaaaaaacaaagcgttgccggtaggtacgctgttggtggaactgatttat
gtggttgaagcccaggctccgaagcagttgcagctcaaccgcttcctgccaccgacgccg
gtacgtatgctgctggataaaaacggcaacaacctggcggcgcaggtagagtttgaaacc
tttaaccgccagcttaacgcggttaaccgtcacaccggcagcaaactggttaacgccgtg
cagcaggatgttcacgctatccttcaactgggtgaagcgcagatcgagaaatctgcccgt
gcattgattgatgcagcgcgtaacgaagccgacgaaaaactgtctgccgagctgtctcgt
ctggaagctctgcgtgcagtgaacccgaacattcgtgacgacgaactgaccgccattgag
agcaaccgtcagcaggtaatggaaagcctggatcaggcaggttggcgtctggatgccctg
cgtttgatcgttgtaacgcatcagtaa
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