Escherichia coli K-12 W3110: JW1010
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Entry
JW1010 CDS
T00068
Symbol
ycdS
Name
(GenBank) predicted outer membrane protein
KO
K11935
biofilm PGA synthesis protein PgaA
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
JW1010 (ycdS)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PgaA_barrel
TPR_2
TPR_1
TPR_11
HrpB1_HrpK
DUF6323
Motif
Other DBs
NCBI-ProteinID:
BAA35806
UniProt:
P69434
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(1090288..1092711)
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AA seq
807 aa
AA seq
DB search
MYSSSRKRCPKTKWALKLLTAAFLAASPAAKSAVNNAYDALIIEARKGNTQPALSWFALK
SALSNNQIADWLQIALWAGQDKQVITVYNRYRHQQLPARGYAAVAVAYRNLQQWQNSLTL
WQKALSLEPQNKDYQRGQILTLADAGHYDTALVKLKQLNSGAPDKANLLAEAYIYKLAGR
HQDELRAMTESLPENASTQQYPTEYVQALRNNQLAAAIDDANLTPDIRADIHAELVRLSF
MPTRSESERYAIADRALAQYAALEILWHDNPDRTAQYQRIQVDHLGALLTRDRYKDVISH
YQRLKKTGQIIPPWGQYWVASAYLKDHQPKKAQSIMTELFYHKETIAPDLSDEELADLFY
SHLESENYPGALTVTQHTINTSPPFLRLMGTPTSIPNDTWLQGHSFLSTVAKYSNDLPQA
EMTARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVIEPRNINLEVEQAWTAL
TLQEWQQAAVLTHDVVEREPQDPGVVRLKRAVDVHNLAELRIAGSTGIDAEGPDSGKHDV
DLTTIVYSPPLKDNWRGFAGFGYADGQFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERVF
NHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMKNGVTGNSAQAYVRWYQNERRK
YGVSWAFTDFSDSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEHDTPYYNPIKTF
DIVPAFEASHLLWRSYENSWEQIFSAGVGASWQKHYGTDVVTQLGYGQRISWNDVIDAGA
TLRWEKRPYDGDREHNLYVEFDMTFRF
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtattcaagtagcagaaaaaggtgcccgaaaaccaaatgggctttgaaacttcttact
gccgcatttttagcagcgagtcccgcggcgaagagtgctgttaataacgcctatgatgca
ttgattattgaagctcgcaagggtaatactcagccagctttgtcatggtttgcactaaaa
tcagcactcagcaataaccaaattgctgactggttacagattgccttatgggccgggcaa
gataaacaggttattaccgtttacaaccgctaccgtcatcagcaattaccagcgcgtggt
tatgcagctgtcgccgtcgcttatcgtaacctgcaacaatggcaaaactcgcttacactg
tggcaaaaggcgctctctctggagccgcaaaataaggattatcaacggggacaaatttta
accctggcagatgctggtcactatgatactgcgctggttaaacttaagcagcttaactct
ggagcaccggacaaagccaatttactcgcagaagcctatatctataaactggcggggcgt
catcaggatgaattacgggcgatgacagagtcattacctgaaaatgcatctacgcaacaa
tatcccacagaatacgtgcaggcattacgtaataatcaacttgctgccgcgattgacgat
gccaatttaacgccagatattcgcgctgatattcatgccgaactggtcagactgtcgttt
atgcctacgcgcagtgaaagtgaacgttatgccattgccgatcgcgccctcgcccaatac
gctgcattagaaattctgtggcacgataacccagaccgcactgcccagtaccagcgtatt
caggttgatcatcttggcgcgttattaactcgcgatcgttataaagacgttatttctcac
tatcagcgattaaaaaagacggggcaaattattccgccctgggggcaatattgggttgca
tcggcttatctcaaagatcatcagccgaaaaaagcacagtcaataatgaccgagctcttt
tatcacaaggagaccattgccccggatttatccgatgaagaacttgcggatctcttttac
agccacctggagagtgaaaattatccgggcgcgctaactgtcacccaacataccattaat
acttcgccgcctttccttcggttaatgggcacgcctacgagcatcccgaatgatacctgg
ttacaggggcattcgtttctctcaaccgtagcaaaatatagtaatgatcttcctcaggct
gaaatgacagccagagagcttgcttataacgcaccaggaaatcagggactgcgcattgat
tacgcgagtgtgttacaagcccgcggttggcctcgtgcagcagaaaatgaattaaaaaaa
gcagaagtgatcgagccacgtaatattaatctggaggttgaacaagcctggacagcatta
acgttacaagaatggcagcaggcagctgtcttaacgcacgatgttgtcgaacgtgaaccg
caagatcccggcgttgtacgattaaaacgtgcggttgatgtacataatcttgcagagctt
cgtatcgctggctcaacaggaattgatgccgaaggcccggatagtggtaaacatgatgtc
gacttaaccaccatcgtttattcaccaccgctgaaggataactggcgcggttttgctgga
ttcggttatgccgatggacaatttagcgaaggaaaagggattgttcgcgactggcttgcg
ggtgttgagtggcggtcacgtaatatctggctcgaggcagagtacgctgaacgcgttttc
aatcatgagcataaacccggcgcgcgcctgtctggctggtatgattttaatgataactgg
cgtattggttcgcaactggaacgcctctctcaccgcgttccattacgggcaatgaaaaat
ggtgttacaggcaacagtgctcaggcttatgttcgctggtatcaaaatgagcggcgtaag
tacggtgtctcctgggctttcactgatttttccgacagtaaccagcgtcatgaagtctca
cttgagggtcaggaacgcatctggtcttcaccatatttgattgtcgatttcctacccagt
ctgtattacgaacaaaatacagaacacgataccccatactacaaccctataaaaacgttc
gatattgttccggcatttgaggcaagccatttgttatggcgaagctatgaaaatagctgg
gagcaaatattcagcgcaggtgttggtgcctcctggcaaaaacattatggcacggatgtc
gtcacccaactcggctacgggcaacgcattagttggaatgacgtgattgatgctggcgca
acgctacgctgggaaaaacgaccttatgacggtgacagagaacacaacttatacgttgaa
ttcgatatgacattcagattttaa
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