Escherichia coli K-12 W3110: JW1901
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Entry
JW1901 CDS
T00068
Symbol
sdiA
Name
(GenBank) DNA-binding transcriptional activator
KO
K07782
LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj02020
Two-component system
ecj02024
Quorum sensing
ecj02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JW1901 (sdiA)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JW1901 (sdiA)
02026 Biofilm formation - Escherichia coli
JW1901 (sdiA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecj03000
]
JW1901 (sdiA)
Transcription factors [BR:
ecj03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
JW1901 (sdiA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autoind_bind
GerE
Sigma70_r4_2
HTH_20
Sigma70_r4
HTH_23
HTH_10
Motif
Other DBs
NCBI-ProteinID:
BAA15736
UniProt:
P07026
Structure
PDB
PDBj
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All DBs
Position
complement(1998247..1998969)
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AA seq
240 aa
AA seq
DB search
MQDKDFFSWRRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFY
TNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVT
QYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNF
SKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgcaggataaggattttttcagctggcgtcgcacgatgctgttgcgttttcagaggatg
gagaccgcagaagaggtctaccatgaaattgagcttcaggctcagcagctggagtacgat
tactattcgttatgtgtccgccacccggtaccattcactcgacctaaagtggctttttac
accaattaccctgaggcgtgggttagttattatcaggcaaaaaactttctcgcaattgat
ccggtgctgaaccctgaaaactttagtcagggccatttaatgtggaatgatgacttattc
agcgaagcacagccgttatgggaagccgcgcgcgcacatggtttacgccgcggtgtcact
cagtatttaatgctgccaaaccgggcgctgggctttttgtccttttcccgttgcagcgcg
cgcgaaatacccattcttagtgatgaactgcaattaaaaatgcagttactggtgcgcgaa
agtctgatggctctgatgcgtttaaatgatgaaatagtgatgacgccagagatgaatttc
agcaagcgcgaaaaagaaattctgaggtggacggcggaagggaaaacatcagcagagata
gcgatgattttgtcaatctctgagaatacggtcaatttccaccagaaaaacatgcagaaa
aaaattaatgcaccaaataagacccaggttgcctgttacgcggccgctactggcttaatt
tga
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