KEGG   Escherichia coli K-12 W3110: JW3040
Entry
JW3040            CDS       T00068                                 
Symbol
ygjF
Name
(GenBank) G/U mismatch-specific DNA glycosylase
  KO
K03649  double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
Organism
ecj  Escherichia coli K-12 W3110
Pathway
ecj03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ecj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    JW3040 (ygjF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ecj03400]
    JW3040 (ygjF)
Enzymes [BR:ecj01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.28  double-stranded uracil-DNA glycosylase
     JW3040 (ygjF)
DNA repair and recombination proteins [BR:ecj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     JW3040 (ygjF)
SSDB
Motif
Pfam: UDG
Other DBs
NCBI-ProteinID: BAE77119
UniProt: P0A9H1
Structure
LinkDB
Position
complement(3213623..3214129)
AA seq 168 aa
MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLL
DYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRG
AQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELDQALVVRGR
NT seq 507 nt   +upstreamnt  +downstreamnt
atggttgaggatattttggctccagggttacgggtcgtgttttgcggtatcaaccctggg
ctttcatccgccgggactggttttccctttgctcatccggcaaatcgcttctggaaggtg
atatatcaggccgggtttaccgaccgtcagttgaagccgcaggaggcacagcatctgctg
gattatcgttgtggcgtcaccaaactggtagaccgtccaacggtgcaagccaatgaagtt
tcaaagcaggagctacacgcaggcgggcgtaagctgattgaaaaaattgaagattatcag
ccgcaggcgttggcgattctgggcaaacaagcatatgaacagggattcagccagcgcggt
gcacagtgggggaaacaaacgctcaccattggttcgacgcagatttgggtgctgccaaat
cccagcggtttaagtcgcgtttcactggagaaactggttgaagcgtatcgcgagctggac
caggcgctggtagtgcgtgggcgataa

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