Escherichia coli K-12 W3110: JW3040
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Entry
JW3040 CDS
T00068
Symbol
ygjF
Name
(GenBank) G/U mismatch-specific DNA glycosylase
KO
K03649
double-stranded uracil-DNA glycosylase [EC:
3.2.2.28
]
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JW3040 (ygjF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecj03400
]
JW3040 (ygjF)
Enzymes [BR:
ecj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.28 double-stranded uracil-DNA glycosylase
JW3040 (ygjF)
DNA repair and recombination proteins [BR:
ecj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JW3040 (ygjF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
BAE77119
UniProt:
P0A9H1
Structure
PDB
LinkDB
All DBs
Position
complement(3213623..3214129)
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AA seq
168 aa
AA seq
DB search
MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLL
DYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRG
AQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELDQALVVRGR
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atggttgaggatattttggctccagggttacgggtcgtgttttgcggtatcaaccctggg
ctttcatccgccgggactggttttccctttgctcatccggcaaatcgcttctggaaggtg
atatatcaggccgggtttaccgaccgtcagttgaagccgcaggaggcacagcatctgctg
gattatcgttgtggcgtcaccaaactggtagaccgtccaacggtgcaagccaatgaagtt
tcaaagcaggagctacacgcaggcgggcgtaagctgattgaaaaaattgaagattatcag
ccgcaggcgttggcgattctgggcaaacaagcatatgaacagggattcagccagcgcggt
gcacagtgggggaaacaaacgctcaccattggttcgacgcagatttgggtgctgccaaat
cccagcggtttaagtcgcgtttcactggagaaactggttgaagcgtatcgcgagctggac
caggcgctggtagtgcgtgggcgataa
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