Escherichia coli K-12 W3110: JW3149
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Entry
JW3149 CDS
T00068
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj00550
Peptidoglycan biosynthesis
ecj01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
JW3149 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ecj01002
]
JW3149 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ecj01011
]
JW3149 (dacB)
Enzymes [BR:
ecj01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
JW3149 (dacB)
Peptidases and inhibitors [BR:
ecj01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
JW3149 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
ecj01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
JW3149 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
BAE77226
UniProt:
P24228
Structure
PDB
PDBj
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All DBs
Position
3328818..3330251
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AA seq
477 aa
AA seq
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MRFSRFIIGLTSCIAFSVQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALP
ASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQDIRNMV
ATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYS
APKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
PLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLK
IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLS
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
LQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgattttccagatttatcatcggattgaccagctgtatagcgttcagtgttcaggcc
gcaaatgttgatgagtacattactcaactccccgctggtgccaaccttgccctgatggtg
caaaaagtcggcgcgtcggcccccgctattgattaccacagtcagcagatggcgctgcct
gccagtacccagaaagtgattactgcgctggcggcgttgattcaactcggccccgatttt
cgttttaccacgacgcttgaaaccaaaggcaatgtggaaaacggcgtacttaagggtgac
ttagtggcgcgatttggtgccgatccgacgttaaaacgtcaggatattcgcaatatggtc
gcgactttgaaaaaatctggcgtcaaccaaatcgatggcaatgtgttgatagatacctcc
attttcgccagccacgataaagcccccggctggccatggaatgacatgacacaatgcttt
agcgctccgcctgccgccgccatagttgaccgcaactgtttctccgtctcgctctacagt
gccccaaagcctggtgatatggcttttatacgcgtggcatcttattaccccgttacgatg
ttcagccaggtacgcaccctcccccgtggttctgccgaagcgcaatactgcgaactggat
gtggtgccaggcgacctgaaccgctttacgctgacgggatgcctgccacaacgttctgag
ccgctcccgttggcttttgccgtgcaggatggagccagctatgccggtgcaattctgaaa
gatgagttaaaacaggcgggtatcacctggagcggaacactgctgcgccagactcaggtt
aacgaacctggaacggtagttgccagtaaacagtcggccccgctgcacgatctgcttaag
attatgctgaaaaagtcggacaacatgatcgccgatacggttttccgcatgataggccat
gcgcgcttcaatgtgcctggaacatggcgggccgggtcggacgccgtgcgtcagatcctg
cgccagcaagccggtgtcgatattggaaacaccattattgccgatggttcagggctttcg
cggcataacctgattgcccccgccaccatgatgcaggtgctgcaatacattgcccaacac
gacaatgaacttaactttatctccatgctgccgctggcgggctatgacggctctttgcag
taccgtgcaggtctgcatcaggcgggcgtggatggaaaagtctcagcgaaaaccggttcg
ttgcagggggtatataacctggcgggattcattaccacagcgagcgggcaacgaatggcg
tttgtgcaatatctttctggctatgcagtagaacctgcggatcagcgtaatcgccgtatt
ccgttagtgcgttttgaaagccgtttgtataaagatatttatcagaacaattag
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