Escherichia coli K-12 W3110: JW3385
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Entry
JW3385 CDS
T00068
Symbol
rtcR
Name
(GenBank) sigma 54-dependent transcriptional regulator of rtcBA expression
KO
K14414
transcriptional regulatory protein RtcR
Organism
ecj
Escherichia coli K-12 W3110
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecj03000
]
JW3385 (rtcR)
Transcription factors [BR:
ecj03000
]
Prokaryotic type
Other transcription factors
Others
JW3385 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
NACHT
AAA_22
AAA_16
AAA_30
AAA_7
AAA_19
AAA_33
AAA_2
T2SSE
AAA_14
ATPase_2
TsaE
ResIII
MCM
BrxC_BrxD
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
BAE77870
UniProt:
P38035
LinkDB
All DBs
Position
complement(4080550..4082148)
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AA seq
532 aa
AA seq
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MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK
RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG
AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG
LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT
RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI
CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggtaccgtactggattatgccgggcgcggc
agtcagcgctggtcaaaatggcgtccgacactctgtttatgccagcaagaatcgttggtc
atcgatcgactggaattgttgcacgacgcccgctcgcgctcgctatttgaaacgcttaaa
cgcgatatcgccagcgtttcgccagaaacagaagtggtgagcgttgagattgaactgcat
aacccgtgggatttcgaagaggtctacgcctgcctgcatgatttcgcccgtggttacgag
tttcagccagaaaaagaagactatttaattcacatcaccaccggtacccacgtcgcgcag
atttgctggtttctgctggcagaagcgcgttacctgcccgcccggctgatacaatcttca
cctccgcgcaaaaaagaacagccgcgcggcccaggtgaagtaacgattatcgatctcgat
ttaagccgttataacgccatcgccagccgctttgccgaggaacgccagcaaacgcttgat
tttcttaagtccggcattgccacgcgtaacccccacttcaaccgcatgattgagcagatc
gaaaaagtggcgatcaaatcccgcgcgccgattctgcttaacggtccaaccggcgcgggc
aagtcatttctggcgcgacgcatcttagagttaaaacaggcgcggcatcagtttagcggc
gcgtttgtggaagtgaactgcgccaccctgcgcggcgataccgccatgtcgacgctgttt
ggtcatgtaaaaggcgcgtttaccggggcgcgggaatctcgtgaaggtttattacgcagc
gccaacggcggaatgttgtttcttgatgagattggcgaactgggcgcagacgaacaggca
atgctgctgaaagccattgaagagaaaaccttttacccgtttggcagcgatcgccaggtg
agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaa
ggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggt
ctacgccagcgccaggaagatattgaaccgaacctggattatgaagtggagcgccacgcc
tcactcactggcgacagcgtgcgttttaacaccgaagcgcggcgcgcctggttggctttt
gcgacctctccccaggcaacatggcgcggtaactttcgcgaactttctgccagcgtcacg
cggatggccacctttgccactagcggacgcatcactctggacgtggttgaagatgagata
aaccgtctgcgctataactggcaggagagccgcccctccgcgcttacggcgttgctgggc
gcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacacgttatcgctatc
tgccgccaggcaaagtcgctttccgcagccggacgccagctttttgacgtttcgcgccag
ggcaaagccagcgtcaatgacgcggatcggctacgcaaatacctggcgcgttttggtctg
acgtgggaagccgtgcaggatcagcacagctccagttga
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