Escherichia coli K-12 W3110: JW3941
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Entry
JW3941 CDS
T00068
Symbol
birA
Name
(GenBank) bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding
KO
K03524
BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:
6.3.4.15
]
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj00780
Biotin metabolism
ecj01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00780 Biotin metabolism
JW3941 (birA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecj03000
]
JW3941 (birA)
Enzymes [BR:
ecj01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.15 biotin---[biotin carboxyl-carrier protein] ligase
JW3941 (birA)
Transcription factors [BR:
ecj03000
]
Prokaryotic type
Helix-turn-helix
Other families
JW3941 (birA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BPL_LplA_LipB
BPL_C
HTH_11
BPL_LplA_LipB_2
HTH_24
MarR_2
HTH_5
FloA
Rrf2
Mga
Motif
Other DBs
NCBI-ProteinID:
BAE77342
UniProt:
P06709
Structure
PDB
PDBj
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All DBs
Position
complement(3462634..3463599)
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AA seq
321 aa
AA seq
DB search
MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSL
PEPIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRG
RKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQ
DRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAA
MLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLL
EQDGIIKPWMGGEISLRSAEK
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgaaggataacaccgtgccactgaaattgattgccctgttagcgaacggtgaatttcac
tctggcgagcagttgggtgaaacgctgggaatgagccgggcggctattaataaacacatt
cagacactgcgtgactggggcgttgatgtctttaccgttccgggtaaaggatacagcctg
cctgagcctatccagttacttaatgctaaacagatattgggtcagctggatggcggtagt
gtagccgtgctgccagtgattgactccacgaatcagtaccttcttgatcgtatcggagag
cttaaatcgggcgatgcttgcattgcagaataccagcaggctggccgtggtcgccggggt
cggaaatggttttcgccttttggcgcaaacttatatttgtcgatgttctggcgtctggaa
caaggcccggcggcggcgattggtttaagtctggttatcggtatcgtgatggcggaagta
ttacgcaagctgggtgcagataaagttcgtgttaaatggcctaatgacctctatctgcag
gatcgcaagctggcaggcattctggtggagctgactggcaaaactggcgatgcggcgcaa
atagtcattggagccgggatcaacatggcaatgcgccgtgttgaagagagtgtcgttaat
caggggtggatcacgctgcaggaagcggggatcaatctcgatcgtaatacgttggcggcc
atgctaatacgtgaattacgtgctgcgttggaactcttcgaacaagaaggattggcacct
tatctgtcgcgctgggaaaagctggataattttattaatcgcccagtgaaacttatcatt
ggtgataaagaaatatttggcatttcacgcggaatagacaaacagggggctttattactt
gagcaggatggaataataaaaccctggatgggcggtgaaatatccctgcgtagtgcagaa
aaataa
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