Escherichia coli K-12 W3110: JW4130
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Entry
JW4130 CDS
T00068
Symbol
hfq
Name
(GenBank) HF-I, host factor for RNA phage Q beta replication
KO
K03666
host factor-I protein
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj02024
Quorum sensing
ecj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JW4130 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JW4130 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecj03019
]
JW4130 (hfq)
03036 Chromosome and associated proteins [BR:
ecj03036
]
JW4130 (hfq)
Messenger RNA biogenesis [BR:
ecj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
JW4130 (hfq)
Chromosome and associated proteins [BR:
ecj03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
JW4130 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
BAE78173
UniProt:
P0A6X3
Structure
PDB
PDBj
LinkDB
All DBs
Position
4404968..4405276
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AA seq
102 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcaaatcgagtcttttgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttacaagcacgcgatttct
actgttgtcccgtctcgcccggtttctcatcacagtaacaacgccggtggcggtaccagc
agtaactaccatcatggtagcagcgcgcagaatacttccgcgcaacaggacagcgaagaa
accgaataa
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