Escherichia coli K-12 W3110: JW5437
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Entry
JW5437 CDS
T00068
Symbol
rpoS
Name
(GenBank) RNA polymerase, sigma S (sigma 38) factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
JW5437 (rpoS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecj03021
]
JW5437 (rpoS)
Transcription machinery [BR:
ecj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JW5437 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BAE76818
UniProt:
P13445
Structure
PDB
PDBj
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All DBs
Position
complement(2865215..2866090)
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AA seq
291 aa
AA seq
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MAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNL
RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM
NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI
TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG
LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
ttggccgaagaggaactgttatcgcagggagccacacagcgtgtgttggacgcgactcag
ctttaccttggtgagattggttattcaccactgttaacggccgaagaagaagtttatttt
gcgcgtcgcgcactgcgtggagatgtcgcctctcgccgccggatgatcgagagtaacttg
cgtctggtggtaaaaattgcccgccgttatggcaatcgtggtctggcgttgctggacctt
atcgaagagggcaacctggggctgatccgcgcggtagagaagtttgacccggaacgtggt
ttccgcttctcaacatacgcaacctggtggattcgccagacgattgaacgggcgattatg
aaccaaacccgtactattcgtttgccgattcacatcgtaaaggagctgaacgtttacctg
cgaaccgcacgtgagttgtcccataagctggaccatgaaccaagtgcggaagagatcgca
gagcaactggataagccagttgatgacgtcagccgtatgcttcgtcttaacgagcgcatt
acctcggtagacaccccgctgggtggtgattccgaaaaagcgttgctggacatcctggcc
gatgaaaaagagaacggtccggaagataccacgcaagatgacgatatgaagcagagcatc
gtcaaatggctgttcgagctgaacgccaaacagcgtgaagtgctggcacgtcgattcggt
ttgctggggtacgaagcggcaacactggaagatgtaggtcgtgaaattggcctcacccgt
gaacgtgttcgccagattcaggttgaaggcctgcgccgtttgcgcgaaatcctgcaaacg
caggggctgaatatcgaagcgctgttccgcgagtaa
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