Escherichia coli K-12 W3110: JW5740
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Entry
JW5740 CDS
T00068
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
JW5740 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecj03019
]
JW5740 (orn)
03009 Ribosome biogenesis [BR:
ecj03009
]
JW5740 (orn)
Messenger RNA biogenesis [BR:
ecj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JW5740 (orn)
Ribosome biogenesis [BR:
ecj03009
]
Eukaryotic type
Pre-60S particles
RNases
JW5740 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BAE78166
UniProt:
P0A784
Structure
PDB
PDBj
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All DBs
Position
4396284..4396829
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AA seq
181 aa
AA seq
DB search
MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDD
WNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYM
PELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIK
L
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccaatgaaaacaacctgatttggatcgatcttgagatgaccggtctggatccc
gagcgcgatcgcattattgagattgccacgctggtgaccgatgccaacctgaatattctg
gcagaagggccgaccattgcagtacaccagtctgatgaacagctggcgctgatggatgac
tggaacgtgcgcacccataccgccagcgggctggtagagcgcgtgaaagcgagcacgatg
ggcgatcgggaagctgaactggcaacgctcgaatttttaaaacagtgggtgcctgcggga
aaatcgccgatttgcggtaacagcatcggtcaggaccgtcgtttcctgtttaaatacatg
ccggagctggaagcctacttccactaccgttatctcgatgtcagcaccctgaaagagctg
gcgcgccgctggaagccggaaattctggatggttttaccaagcaggggacgcatcaggcg
atggatgatatccgtgaatcggtggcggagctggcttactaccgcgagcattttatcaag
ctgtaa
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