Escherichia coli K-12 W3110: JW5780
Help
Entry
JW5780 CDS
T00068
Symbol
fimD
Name
(GenBank) outer membrane usher protein, type 1 fimbrial synthesis
KO
K07347
outer membrane usher protein
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JW5780 (fimD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ecj02000
]
JW5780 (fimD)
02044 Secretion system [BR:
ecj02044
]
JW5780 (fimD)
02035 Bacterial motility proteins [BR:
ecj02035
]
JW5780 (fimD)
Transporters [BR:
ecj02000
]
Other transporters
Pores ion channels [TC:
1
]
JW5780 (fimD)
Secretion system [BR:
ecj02044
]
Chaperone-usher system
Type 1 pilus assembly protein
JW5780 (fimD)
Bacterial motility proteins [BR:
ecj02035
]
Pilus system
Fimbrial proteins
JW5780 (fimD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
Motif
Other DBs
NCBI-ProteinID:
BAE78310
UniProt:
P30130
Structure
PDB
PDBj
LinkDB
All DBs
Position
4549776..4552412
Genome browser
AA seq
878 aa
AA seq
DB search
MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLVVACAFAAQAPLSSADLYFNPRFLADDPQA
VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN
TASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP
GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDRSSGSK
NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV
IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV
PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKTRFFQSTLLHGLPAGWTIYGGTQLADRY
RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR
YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT
STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI
PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD
GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL
VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP
TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA
GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatctgaatttaagactttaccagcgaaacacacaatgcttgcatattcgtaag
catcgtttggctggtttttttgtccgactcgttgtcgcctgtgcttttgccgcacaggca
cctttgtcatctgccgacctctattttaatccgcgctttttagcggatgatccccaggct
gtggccgatttatcgcgttttgaaaatgggcaagaattaccgccagggacgtatcgcgtc
gatatctatttgaataatggttatatggcaacgcgtgatgtcacatttaatacgggcgac
agtgaacaagggattgttccctgcctgacacgcgcgcaactcgccagtatggggctgaat
acggcttctgtcgccggtatgaatctgctggcggatgatgcctgtgtgccattaaccaca
atggtccaggacgctactgcgcatctggatgttggtcagcagcgactgaacctgacgatc
cctcaggcatttatgagtaatcgcgcgcgtggttatattcctcctgagttatgggatccc
ggtattaatgccggattgctcaattataatttcagcggaaatagtgtacagaatcggatt
gggggtaacagccattatgcatatttaaacctacagagtgggttaaatattggtgcgtgg
cgtttacgcgacaataccacctggagttataacagtagcgacagatcatcaggtagcaaa
aataaatggcagcatatcaatacctggcttgagcgagacataataccgttacgttcccgg
ctgacgctgggtgatggttatactcagggcgatattttcgatggtattaactttcgcggc
gcacaattggcctcagatgacaatatgttacccgatagtcaaagaggatttgccccggtg
atccacggtattgctcgtggtactgcacaggtcactattaaacaaaatgggtatgacatt
tataatagtacggtgccaccggggccttttaccatcaacgatatctatgccgcaggtaat
agtggtgacttgcaggtaacgatcaaagaggctgacggcagcacgcagatttttaccgta
ccctattcgtcagtcccgcttttgcaacgtgaagggcatactcgttattccattacggca
ggagaataccgtagtggaaatgcgcagcaggaaaaaacccgctttttccagagtacatta
ctccacggccttccggctggctggacaatatatggtggaacgcaactggcggatcgttat
cgtgcttttaatttcggtatcgggaaaaacatgggggcactgggcgctctgtctgtggat
atgacgcaggctaattccacacttcccgatgacagtcagcatgacggacaatcggtgcgt
tttctctataacaaatcgctcaatgaatcaggcacgaatattcagttagtgggttaccgt
tattcgaccagcggatattttaatttcgctgatacaacatacagtcgaatgaatggctac
aacatcgaaacacaggacggagttattcaggttaagccgaaattcaccgactattacaac
ctcgcttataacaaacgcgggaaattacaactcaccgttactcagcaactcgggcgcaca
tcaacactgtatttgagtggtagccatcaaacttattggggaacgagtaatgtcgatgag
caattccaggctggattaaatactgcgttcgaagatatcaactggacgctcagctatagc
ctgacgaaaaacgcctggcaaaaaggacgggatcagatgttagcgcttaacgtcaatatt
cctttcagccactggctgcgttctgacagtaaatctcagtggcgacatgccagtgccagc
tacagcatgtcacacgatctcaacggtcggatgaccaatctggctggtgtatacggtacg
ttgctggaagacaacaacctcagctatagcgtgcaaaccggctatgccgggggaggcgat
ggaaatagcggaagtacaggctacgccacgctgaattatcgcggtggttacggcaatgcc
aatatcggttacagccatagcgatgatattaagcagctctattacggagtcagcggtggg
gtactggctcatgccaatggcgtaacgctggggcagccgttaaacgatacggtggtgctt
gttaaagcgcctggcgcaaaagatgcaaaagtcgaaaaccagacgggggtgcgtaccgac
tggcgtggttatgccgtgctgccttatgccactgaatatcgggaaaatagagtggcgctg
gataccaataccctggctgataacgtcgatttagataacgcggttgctaacgttgttccc
actcgtggggcgatcgtgcgagcagagtttaaagcgcgcgttgggataaaactgctcatg
acgctgacccacaataataagccgctgccgtttggggcgatggtgacatcagagagtagc
cagagtagcggcattgttgcggataatggtcaggtttacctcagcggaatgcctttagcg
ggaaaagttcaggtgaaatggggagaagaggaaaatgctcactgtgtcgccaattatcaa
ctgccaccagagagtcagcagcagttattaacccagctatcagctgaatgtcgttaa
DBGET
integrated database retrieval system
