Escherichia coli K-12 W3110: JW5851
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Entry
JW5851 CDS
T00068
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ecj
Escherichia coli K-12 W3110
Pathway
ecj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JW5851 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecj03019
]
JW5851 (pnp)
03016 Transfer RNA biogenesis [BR:
ecj03016
]
JW5851 (pnp)
Enzymes [BR:
ecj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JW5851 (pnp)
Messenger RNA biogenesis [BR:
ecj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JW5851 (pnp)
Transfer RNA biogenesis [BR:
ecj03016
]
Prokaryotic type
tRNA degradation factors
JW5851 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
S1_RRP5
OB_RRP5_4th
aRib
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
BAE77210
UniProt:
P05055
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(3308888..3311092)
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AA seq
734 aa
AA seq
DB search
MRRRSGINTSAVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD
TAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDR
PIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI
NDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQ
NINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSET
IATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT
HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK
RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI
KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKE
IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIR
ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA
FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ
PAAAPEAPAAEQGE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagaagatcgggtattaacaccagtgccgtaaggtactgtctaagaaagagaaag
gatattacattgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgact
ctggaaaccggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgac
accgcggtattcgttaccgttgttggccagaaaaaagccaaaccaggtcaggacttcttc
ccactgaccgttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttc
ttccgtcgtgaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgc
ccgattcgcccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtg
gtttctgttaacccgcaagttaacccggatatcgtcgcgatgattggtgcttccgcagcg
ctgtctctgtctggtattccgttcaatggcccgattggtgctgcccgcgtaggttacatc
aatgaccagtacgtactgaacccgactcaggacgagctgaaagagagcaaactggatctg
gttgttgccggtactgaagccgctgtactgatggttgaatctgaagctcaactgctgagc
gaagaccagatgctgggcgcagtagtgttcggtcatgaacaacagcaggttgttattcag
aacatcaatgaactggtgaaagaagccggtaaaccgcgttgggactggcagccggagccg
gtaaacgaagcgctaaacgcgcgcgttgctgcactggctgaagctcgcctgagcgatgct
taccgcatcaccgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaacc
atcgcgacgctgcttgctgaagacgaaaccctggacgaaaacgaactgggtgaaattctg
cacgcgatcgagaaaaacgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgac
ggtcgtgaaaaagatatgatccgtggtctggatgtgcgtactggcgtgctgccgcgtact
cacggttctgcgctgttcacccgtggtgaaacgcaggcgctggttaccgcaacgctgggt
actgctcgtgacgcgcaggttcttgatgaactgatgggcgaacgtaccgataccttcctg
ttccactacaacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaag
cgtcgtgaaattggtcacggtcgtctggcgaagcgcggcgtgctggcagtcatgccggat
atggacaaattcccgtacaccgtacgtgttgtgtctgaaatcactgaatccaacggttcc
tcttctatggcttccgtgtgcggcgcgtctctggcgctgatggacgcaggtgtgccgatc
aaagctgccgttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgta
ctgtctgacattttgggcgacgaagatcacctgggcgatatggacttcaaagttgcaggt
tcccgcgacggtatctctgcactgcagatggatatcaaaattgaaggtatcaccaaagag
atcatgcaggttgcgctgaaccaggctaaaggtgcgcgtctgcatatcctgggcgtaatg
gaacaggcgatcaacgcgccgcgtggcgatatctctgagttcgcaccgcgtatccatacc
atcaagatcaacccggacaagatcaaagatgttatcggtaaaggcggttctgtaatccgt
gctctgaccgaagaaactggcaccaccatcgaaatcgaagatgacggtactgtgaagatt
gcagcgaccgacggcgagaaagcgaaacatgctattcgtcgtatcgaagagatcactgca
gaaatcgaagtgggccgcgtctacactggtaaagtgacccgtatcgttgactttggcgca
tttgttgccatcggcggcggtaaagaaggtctggtccacatctctcaaatcgctgacaaa
cgcgttgagaaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagttctg
gaagttgatcgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaa
cctgctgcagcaccggaagctccggctgctgaacagggcgagtaa
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