Escherichia coli ATCC 8739: EcolC_1829
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Entry
EcolC_1829 CDS
T00697
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ecl
Escherichia coli ATCC 8739
Brite
KEGG Orthology (KO) [BR:
ecl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecl03016
]
EcolC_1829
Enzymes [BR:
ecl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EcolC_1829
Transfer RNA biogenesis [BR:
ecl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EcolC_1829
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACA77478
LinkDB
All DBs
Position
2028710..2029825
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AA seq
371 aa
AA seq
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MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS
PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE
YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR
LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL
WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR
KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE
ALHNLLQEYPQ
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgattaccacggacgatgcgctggcttctttgtgtgaagccgtccgtgcctttccggcg
atagccctggatactgaatttgttcgtacgcgcacttattacccgcagctggggttgatt
caacttttcgatggcgagcatctggcgctaatcgatccactcgggatcaccgactggtca
ccgctgaaagcgatcctgcgcgatccgtccatcacaaaatttctccatgcaggcagtgaa
gatctggaagtgttcctcaatgtctttggcgaattaccacaacccttgattgacacgcaa
atccttgctgccttctgcggacgcccgatgtcatggggtttcgcttccatggtggaagag
tattccggcgttacgctggacaagagtgaatcgcgcaccgactggctggccagaccgctg
accgaacgtcagtgtgaatacgcagcggcggatgtctggtatctgttaccgatcaccgcc
aagcttatggtagaaacggaggcctccggctggctacctgcggcgctggatgaatgccgc
ctgatgcaaatgcgtcgtcaggaagtcgttgcgccggaagatgcctggcgtgatatcacc
aatgcctggcaattacgcacacgccaactggcctgtctgcaactgttagccgactggcga
ctgcgcaaggcgcgagagcgcgatctggcggtgaactttgtcgtgcgtgaagagcatttg
tggtcggtagcgcgttatatgccgggaagtttaggcgaactggacagcctgggtttatcc
ggtagcgaaatccgctttcacggtaaaacgctgctagcgctggtggaaaaagcgcagaca
ttgccggaagatgccttaccgcagccgatgcttaacctgatggacatgccgggttatcgt
aaagcgtttaaagcgattaagtcgctgattactgacgtgagcgaaacgcataagatcagc
gccgaattgctggcatcgcgtcggcaaatcaaccaactgctgaactggcactggaaactg
aaaccgcagaacaatttgccggagctgatttccggctggcgtggtgagctgatggcggaa
gcattacacaatttattgcaggaatatccgcagtaa
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