Escherichia coli ATCC 8739: EcolC_2487
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Entry
EcolC_2487 CDS
T00697
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecl
Escherichia coli ATCC 8739
Pathway
ecl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EcolC_2487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecl03400
]
EcolC_2487
Enzymes [BR:
ecl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EcolC_2487
DNA repair and recombination proteins [BR:
ecl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EcolC_2487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACA78118
LinkDB
All DBs
Position
2735869..2739363
Genome browser
AA seq
1164 aa
AA seq
DB search
MPPYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG
VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT
RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI
ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN
TGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL
PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR
IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT
INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS
SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK
HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL
AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI
DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN
MAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQK
AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA
LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV
ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVA
RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD
LSERKTRIEWVRQFMRELEENAIA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcccccatatgttgaggcatatcctaacgagaatctgacaaccgttatgcctgaacaa
tatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggcgagttaaccggc
gcagcctgtgcaacgctggtagcggaaattgccgaacgtcacgccggtccggtggtactc
attgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagccagttcaccgat
cagatggtgatgaatctggcggactgggaaactcttccctacgacagtttttcgcctcat
caggacattatctcctcgcgcctttccaccctttaccagctaccgacgatgcagcgtggc
gtactgattgttccggtgaatacgcttatgcagcgcgtttgcccacacagttttctccac
ggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagatgcattacgaacccaa
ctggacagcgccggttatcgccatgttgaccaggtgatggagcacggcgaatacgccacg
cgcggcgcgttgctggatctcttcccgatggggagtgagctgccttatcgtcttgatttc
tttgatgatgaaatcgacagcctgcgggtgtttgacgtcgacagccagcgcacgctggag
gaagtagaagcgatcaatctgctgcccgcgcacgaatttccgaccgataaagcggcaatt
gaactgttccgcagccagtggcgcgataccttcgaagtgaagcgcgatccggaacatatt
taccagcaagtgagtaaaggcacattacctgccgggatcgagtactggcagccattgttc
ttcagcgaaccactgccgccgctgttcagttatttccctgccaataccttgctggtgaat
actggcgatctggaaaccagtgccgaacgtttccaggctgacacgctggcgcgttttgag
aatcgcggcgtcgatccgatgcgcccgctgttgccaccacaatcgctctggctgcgggtg
gacgagctcttctcagagctgaaaaactggccccgggtgcagctaaaaactgaacattta
ccgacaaaagccgcgaatgccaatttaggtttccagaaactgccagacctggccgttcag
gcgcaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagactttcgacggtccg
gtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggtgaactgctcgcacga
attaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgaccgtgggcgttat
ctgatgattggcgctgccgaacatggttttgtcgatacggtgcgtaatctggcgctgatc
tgcgaaagcgatctgctcggtgaacgtgttgcccgccgtcgtcaggattctcgccgcacc
atcaaccccgatacactgatccgtaaccttgcggagctgcatattggtcagccggtggtc
catctggagcacggtgtcgggcgctatgccggaatgaccacgctcgaagcgggcggcatt
actggcgagtatttgatgctcacctatgccaacgacgccaaactgtatgttccggtgtcg
tcactgcatctgattagccgttacgcaggtggcgcggaagaaaacgccccgctgcataaa
cttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaaaaagtgcgtgatgtg
gcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggcttcgcgtttaaa
cacgatcgtgagcagtatcagttgttctgcgacagcttcccgtttgaaaccacgccggat
caggcgcaggccattaatgcggtacttagcgacatgtgtcagccgctggcaatggatcgt
ctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgcgccgctttcctg
gcagtagataaccacaagcaggtagcggtgttggtgcctaccacccttcttgcgcagcag
cattacgacaacttccgcgaccgtttcgccaactggccggtacgtatcgaaatgatctcc
cgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcggaagggaaaatc
gatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagtttaaagatttaggc
ctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagagcgcattaaagcg
atgcgcgcgaacgtggatattctgacgcttactgcaacgccgatcccacgcacgctgaat
atggcaatgagcggaatgcgtgacctgtcgattatcgccacgccgcccgcccgtcgtctg
gcagttaaaacctttgtccgtgagtatgacagcctggtggtccgggaggcgatcctgcgt
gaaattttgcgcggggggcaggtttattatctctacaatgatgtggaaaacatccagaaa
gctgccgaacggctggcagaactggtgcctgaagcacggattgccatcggtcacgggcag
atgcgcgagcgcgaactggaacgggtgatgaatgatttccatcatcaacgtttcaacgtg
ctggtttgtaccaccattatcgaaaccgggatcgacatcccgacagccaacaccattatc
attgaacgtgcggatcacttcggtctggcgcagctgcaccagttacgcggtcgcgtcgga
cgttcacatcatcaggcatatgcatggctgctgacgccgcatccaaaagcgatgactacc
gatgcacaaaaacgtcttgaagcgattgcctcgctggaagatctcggtgcaggctttgcg
ctggcaacgcacgatctggagatccgcggcgcgggtgaactgcttggcgaagaacaaagt
ggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaaaacgccgtcgat
gcactgaaagccggacgcgagccgtcgctggaagatctcaccagccagcaaacagaagtc
gagctgcggatgccgtcgctattgccagatgatttcattcctgacgtgaatacgcgtttg
tcgttctataaacgtattgccagcgccaaaacggaaaacgaactggaagagatcaaagtc
gagcttatcgatcgcttcggcctgctgccggatccggcgcgtaccctgctggatgttgcc
cgtctgcgccagcaagcgcagaaactggggatcaggaagctggaaggtaatgagaaaggc
ggggtgatcgaatttgccgagaagaatcacgttaatccggcctggttgattggtttgctg
caaaaacagccgcagcattaccgccttgatggtccgacgcgcctgaaatttattcaggat
ttgagtgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgtgaactggaagag
aacgcgatcgcttaa
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