Enterobacter hormaechei subsp. hoffmannii ECNIH3: ECNIH3_03955
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Entry
ECNIH3_03955 CDS
T03350
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ecla
Enterobacter hormaechei subsp. hoffmannii ECNIH3
Brite
KEGG Orthology (KO) [BR:
ecla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecla03019
]
ECNIH3_03955
Enzymes [BR:
ecla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECNIH3_03955
Messenger RNA biogenesis [BR:
ecla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECNIH3_03955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
HA2_N
DUF2732
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
AIN21491
LinkDB
All DBs
Position
838526..840955
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AA seq
809 aa
AA seq
DB search
MSSLPVAVVLPELLAALEHAPQVLLSAPTGAGKSTWLPLQILREGSISGKIILLEPRRLA
ARNVAQRLAELLNEKPGETVGYRMRAETCIGPSTRLEVVTEGILTRMLQNDPELSGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLRLLIMSATLDNERLRQTLPDAPMISSEGRA
FPVERRYQPLPAHQRFDEAVAIATAELLRQEPGSLLLFLPGVGEIQRVQEQLASRVSSDV
MLCPLYGALHLADQRKAILPAPAGQRKVVLATNIAETSLTIEGIRLVVDSTQERVASFDP
RTGLTRLLTQRISQASMVQRAGRAGRLEPGICLHLTSAEQAERAALQSTPEILQSDLSGL
VMDLMQWGCPDPDQLTWLNPPPVVNLSAARSLLTQLGALEGERLTARGQKMAALGNDPRL
AAMLVAAQGDDEIATAAKLAAILEEPPRGGSSDLGQAFSRHQGNWQQRAQQLCHRLKSRG
GSPDSDKVIPLLAQAFPDRIARRRGLDGRYQLANGMGAMLDSDDALTRHEWLIAPLLLQG
SHSPDARILQAVAVDIDALTRACPQLLQQSDIVEWDDAQGTLKAFRRSQIGKLTLGTKPL
AKPSEEELHQAMLNGIREKGLSVLNWTPEAEQYRIRLHCAAKWLPEKGWPAVDDETLLAT
LEQWLLPQMSGVHSLRALKALDVKAALQNLLDWSLRQRLDSELPGHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEATTPSIAEGRVPLVLELLSPAHRPLQITRDLRAFWAGSYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctctttgcccgtcgccgtcgtccttcctgagctactcgcagccttagaacatgcg
ccacaggttttgctcagcgcgcccaccggagcgggtaaatccacctggctgcccctgcaa
attctgcgcgaggggagcatcagcgggaaaattatcctgctggaaccgcgcaggctggcg
gcgcgcaatgtggcgcagcgcctggcggaactgctgaatgaaaaaccgggcgagacggta
gggtaccggatgcgcgccgaaacctgcattggcccgtctacgcggctggaggtggtcact
gaaggcattctcacccgtatgctgcaaaacgatccggagctgagcggcgtcgggctggtg
atccttgatgaatttcacgagcgcagcctccaggccgatctggcccttgcgctgctgctc
gacgttcagcaggggctgcgcgacgaccttcggctgctgattatgtcggcgacgctggat
aacgagcggctccggcagacgctccctgacgcgccgatgatctcctctgaagggcgtgcg
ttcccggtcgagcgccgctatcagccgctgcctgcccatcagcgttttgacgaagccgtt
gccatcgccaccgccgaattgctccgtcaggaacccggctcgctgctgctgtttttaccc
ggcgtaggcgaaatccagcgcgtacaggagcaactggcatcccgggtgagcagtgacgtt
atgctgtgcccgctctacggcgcgctgcatttggctgaccagcgcaaggcgatccttccc
gcaccggcggggcagcgcaaagtggtactggcgaccaatatcgccgaaaccagtttgacc
atcgaaggcattcgcctggtggtggacagtacgcaggagagggtggccagttttgatccg
cgtaccgggctgaccaggctactgacgcagcgcatcagccaggcctccatggtgcagcgc
gcagggcgagcagggcgtcttgagccgggtatttgcctgcatttaaccagcgccgagcag
gcggagcgtgcggcattgcagagtacgcctgagattttacaaagcgatctctccgggctg
gtaatggatctgatgcagtggggctgcccggaccctgaccagctcacctggcttaatcct
ccgcctgttgtgaacctttccgccgcgcgcagcctgctgacccagcttggcgcgctggaa
ggcgagcgactgacggcgcgcggccagaaaatggcggcgctgggcaacgatccgcgtctg
gcagcgatgctggtggcagcacaaggcgacgatgaaattgccacggcggcaaaactggcg
gctattcttgaggagccgccgcgcggtggcagcagcgatctgggacaggccttttcacgc
catcagggaaactggcaacagcgcgcgcagcagttgtgtcaccgcctgaagagccgggga
ggatcgcctgacagcgataaagttatccctctgctggcccaggccttcccggacagaatc
gcgcgccgtcgcgggctggatggtcgttatcaactggcaaatgggatgggcgcgatgctg
gacagcgatgatgctctgacgcgtcatgaatggctgatcgcgccgctcttactccagggc
agtcactccccggatgcgcgcatcttgcaggcggttgccgtagatattgacgccctgacg
cgtgcctgcccgcagctgcttcagcaatctgacattgtcgaatgggatgatgcccagggc
acgctgaaggcgttccgtcgtagccagattggcaaactgacgctcgggacaaaaccgctg
gctaagccgtcggaggaagagttacaccaggcgatgctgaacggcattcgggaaaaaggg
ctgagcgtattgaactggacgcctgaggctgaacaatatcgtatacgtctgcactgcgcc
gcgaagtggctgcccgaaaaggggtggccagcggtggatgatgagacgctgctcgcgacg
cttgaacagtggttgttgccgcagatgagcggcgtacactccctgcgcgcccttaaggcg
cttgatgttaaggcagcgttacagaatttactggactggtcgttacgtcaacgtctggat
agtgaactgcctgggcattacactgtgccaaccgggagtcggattgccattcgttatcat
gaggataatccgccagcgctggcggttcggatgcaggagatgtttggtgaggccaccacg
ccgtccatcgctgaagggcgcgtgccgttagtgcttgagctgctttcgcctgcgcatcgt
cccttgcagatcacccgcgatctgagggcgttctgggcggggagctatcgtgaagtgcag
aaagagatgaaggggcgatatcccaaacacgtctggccggacgatccggcgaataccgcg
ccgacacggcgcacgaagaaatattcgtaa
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integrated database retrieval system
