Enterobacter hormaechei subsp. hoffmannii ECNIH3: ECNIH3_08205
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Entry
ECNIH3_08205 CDS
T03350
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ecla
Enterobacter hormaechei subsp. hoffmannii ECNIH3
Pathway
ecla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECNIH3_08205 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecla03019
]
ECNIH3_08205 (rne)
03009 Ribosome biogenesis [BR:
ecla03009
]
ECNIH3_08205 (rne)
Enzymes [BR:
ecla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ECNIH3_08205 (rne)
Messenger RNA biogenesis [BR:
ecla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECNIH3_08205 (rne)
Ribosome biogenesis [BR:
ecla03009
]
Prokaryotic type
rRNA processing factors
ECNIH3_08205 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIN22288
LinkDB
All DBs
Position
complement(1733955..1737062)
Genome browser
AA seq
1035 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDEMQ
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
ATLEKPAEKPAVQKVAPAAPKAQPEQPGLLSRIIGALKKMFAAEEVQPEEPKEAPKEAKP
ERQQDRRKRQNNRRDRNDRGDRNERRDNRSDNNEGREQREDNRRNRREKQQQNVEDREIR
QQAGDESEKSKQRDEQQPRRERNRRRNDDKRQAQQEVKNLNREAPVEQQDTEQEERTQVM
PRRKQRQLTQKVRVGVVQAEENDVIAVEAAESTTGTQVAKVDLPAVVENQVEQDESSENR
DNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPMTVACASPEMASGKVWIRYPVA
RPEQAVEEQAVTEEVIAPVVAVEDVVTEAATVVEPQVVETAPPQAVEVETTHPEVIAAPV
DAAPQIIAEEDTVVAEEVAEDAKPVSAAEEPADVAVETVTEEVVQDVEIQVEPVVEEVKA
PEVKSEPVEIVEAVAPAHIATAPMTRAPAPEYVPEAPRHSDWVRPEFNFEGKGAAGGHSA
THMATAPATRPQPVE
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttccttcctctcaaagaaatcgcccgcgaatattttcctgca
aactacaactcccatggccgtccgaacatcaaagatgttctgcgtgaaggtcaggaagtt
atcgtccagatcgataaagaagagcgtggcaacaaaggcgccgcgctgaccacctttatc
agtctggcaggaagctatctggtattgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggcgatgaccgtaccgagctgaaagaagcactggcaagtcttgaactg
ccagacggcatgggccttatcgtgcgcaccgcaggcgttggcaaatctgccgaagcgttg
cagtgggacctgagcttccgcctgaaacactgggaagccatcaagaaagcggcagaaagc
cgtgctgcgccgttcctgatccaccaggaaagcaacgtcatcgtgcgtgccttccgtgat
tatctgcgtcaggacatcggtgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacatcgccgcactgggtcgcccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgaatcccagatcgagtctgccttccag
cgtgaagtgcgtctgccgtccggcggttctatcgttatcgataccaccgaagcgttgacc
gccatcgacatcaactccgcgcgagcaacccgcggcggcgacatcgaagagaccgccttc
aataccaaccttgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgatcgttatcgacttcatcgacatgaccccggttcgccatcagcgtgcggttgaa
aaccgtctgcgtgaagcggtgcgccaggatcgcgcgcgtatccagatcagccatatttct
cgctttggcctgctggagatgtcccgtcagcgcctcagcccgtctctgggtgagtccagc
catcacgtctgcccgcgctgttccggtacaggtaccgttcgtgacaatgaatctctctcc
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gctattgttccggtgccgattgcctcctatctgctgaacgaaaaacgtgcagcggtgagc
gcaatcgaagcgcgtcagggcggcgttcgctgcatcatcgtgccaaacgacgagatgcaa
accccgcactatcacgtgctgcgcgtgcgcaaaggcgaagagacaagcaccctcagctac
ctgctgccgaagctgcatgaagaagaaatggcgctgccgtctgatgaagagcctgccgag
cgtaaactgcctgagcagccagctttagcgaccttcatcatgccggaagcaccgccagaa
gcgacgctggaaaaaccagcggaaaaacctgctgtgcagaaagtggctcctgccgcgcca
aaagcgcagcctgagcagcctggtctcctgagccgcatcatcggtgcgctgaaaaaaatg
tttgccgccgaagaagttcagcctgaggagccgaaagaagcgccaaaagaagcgaaacca
gagcgtcagcaagaccgtcgtaagcgtcagaacaaccgtcgtgaccgcaacgaccgtggc
gatcgtaatgagcgccgtgataatcgttccgataacaacgaaggtcgtgaacagcgcgag
gacaaccgtcgcaaccgtcgcgagaagcaacagcagaacgttgaagatcgtgagattcgc
cagcaggcgggcgatgagtccgagaagagcaaacagcgtgacgagcagcagcctcgccgc
gagcgtaaccgtcgtcgtaacgatgacaaacgccaggctcagcaggaagtcaaaaacctg
aatcgcgaagcgcctgtagaacagcaggacactgagcaggaagagcgtactcaggttatg
ccgcgtcgtaagcagcgccagctgacccagaaagtacgtgtgggtgttgttcaggccgaa
gaaaacgacgttatcgcggttgaagcggctgaaagcacaacgggtacccaggttgcgaaa
gttgacctgccagccgtagtggaaaatcaggttgagcaggacgaaagcagcgaaaaccgt
gataacgcaggtatgccgcgtcgctcccgccgttctccacgccatctgcgcgtgagcggt
cagcgtcgccgtcgttatcgtgacgagcgttacccgacccagtctccaatgccaatgacc
gtggcgtgcgcgtcacctgagatggcatccggtaaagtctggatccgttatccggttgca
cgtccggagcaggctgttgaagaacaggctgtgaccgaagaggtgattgcaccggtcgtc
gcggtggaagatgtcgtgactgaagcggcaaccgtggtcgaaccgcaggttgttgaaaca
gcgccgccgcaggctgtggaagtggaaacgacccatcctgaagtgattgctgcgccggtt
gatgccgcaccgcagatcattgccgaagaagataccgtggtggctgaagaagtcgcggaa
gacgctaagcctgtatccgcagcagaagagcccgcagacgttgccgtcgaaacggtgacg
gaagaggttgttcaggacgtcgagattcaggttgaacctgttgtcgaagaggtcaaagcg
cctgaagtgaaatctgagccggttgagatcgttgaagctgtagcgcctgctcacattgct
accgcgccaatgactcgtgccccggcacctgagtacgtgcctgaagcaccacgccatagt
gactgggttcgtccggaattcaacttcgaaggtaaaggtgctgccggtggtcacagtgcg
acgcacatggctactgccccagctactcgtcctcagcctgttgaataa
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