Enterobacter hormaechei subsp. hoffmannii ECR091: ECR091_08325
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Entry
ECR091_08325 CDS
T03378
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eclc
Enterobacter hormaechei subsp. hoffmannii ECR091
Pathway
eclc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eclc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECR091_08325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eclc03400
]
ECR091_08325
Enzymes [BR:
eclc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECR091_08325
DNA repair and recombination proteins [BR:
eclc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECR091_08325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIN27660
LinkDB
All DBs
Position
complement(1760045..1763491)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRFSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIR
QFTESLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRVQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVDSINLLPAHEFPTDKTAIELFRSQWRDRFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEMLWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLDSFTGPVVFSVESEGRREALGELLGRIKVAPKRIHRLSEATG
NGRYLMIGSAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGYAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKREGELEEIKVELIDRFGILPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVDPMWLIGLLQKQPQHFRLDGPTRLKFTQDLTERKIRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgtttttccttgcctgtaaaagcaggtgaccaacgccagctgggc
gaactgacaggcgcggcctgcgccacgctggtggcggaaattgccgagcgccatccgggg
ccggtggtgctggttgccccggacatgcaaaacgccctgcgcctgcacgacgaaattcgt
cagttcaccgaaagtctggtattcagcctggccgactgggaaacgcttccctacgacagt
ttctctccgcaccaggagatcatctcctcacgcctgtcgacgctgtatcagctccccacc
atgcagcgcggcgtgctgattgtgccggtgaatacactgatgcagcgcgtctgtccgcac
agctatttgcacggccatgcgctggtgatgaaaaaaggccagcgcctgtcgcgcgatgcc
ctgcgcgtgcagcttgacggagccggttaccgccatgtcgatcaggtgatggagcacggc
gaatacgcgacgcgcggtgcgctgctggatctctatccgatgggcagcgaccagccgtat
cgtctggatttcttcgatgatgagatcgacagcctgcgcgtgttcgacgccgacacccag
cgcacgctggaggaagtggactccattaatctgctgcccgcccatgagttcccgacggat
aaaaccgccatcgaactgttccgcagccagtggcgcgacaggttcgacgtgaaacgtgat
gccgaacatatctaccagcaggtcagcaaaggcacccttccggccgggatcgagtactgg
cagcccctgttctttaacgaaccgctgccggcgctgttcagctacttcccggcgaatacg
ctgattgttaacaccggggatatcgacgccagcgccagccgctttgaaagcgaaacgcgc
gcccgctttgaaaaccggggcgttgacccgatgcgtccgctgctgccgccggaaatgctg
tggctgcgtaccgacgagctcaacgccgagctaaaacgctggccgcgtatgcagctcaaa
accgattcgcttgccgataaggcggcgaacaccaatctcgcgttccggacgctgcccgat
ctggccgtccaggcgcagcagaaatccccgctcgataacctgcgcaagtttcttgattcc
ttcaccgggccagtggtgttctccgttgagagtgagggtcgtcgtgaagcgctgggcgaa
ctactaggacggatcaaagttgcgccgaagcgcattcatcgcctgagcgaagcgaccgga
aatggtcgttacctgatgatcggctccgccgagcacggatttattgatacgctcaataac
ctggccttgatttgtgaaagcgacctgctgggcgagcgcgtggcgcgccgtcgtcaggac
agccgtcgcaccatcaacccggacaccctgatccgcaacctggccgaactgcaccccggt
cagccgatcgttcacctggaacacggtgtgggtcgctatcagggaatgaccaccctcgaa
gcaggcggcatcaaaggtgaatacctgatgctgacctacgcgaacgacgccaaactgtac
gtgccagtgtcgtccctgcaccttatcagccgctacgccggtggcgcggaagataacgcg
ccgctgcataagctgggcagcgacgcctggtcacgcgcgcggcagaaggcggcggaaaaa
gtgcgcgacgtggccgccgagctgctggacatttacgcccagcgtgcggccaaagagggt
tatgcgtttaagcatgataaagagcagtaccagctgttctgcgacagcttcccgtttgaa
actacgccggatcaggctcaggccataaatgccgtgctgagcgacatgtgccagccgctg
gcgatggatcgcttagtctgcggcgacgtgggcttcggtaaaaccgaggtagcaatgcgt
gccgctttcctggcggtggaaaacaacaagcaggtggcggtgctggtgccgactaccctc
ctcgcccagcagcacttcgacaacttccgcgaccgcttcgccaactggccggtacgcatt
gagatgctgtcgcgtttccgcagcgccaaagagcagacgcaaatcctggaacaggcaagc
gaaggcaaaattgacattctgatcggcacccacaagctgctgcaaagcgacgtgaagtgg
aaagatctggggctgctgatcgtcgatgaagagcaccgctttggggtgcgccacaaagag
cgcatcaaagcgatgcgcgccgacgtcgacattctgaccctgaccgccacgccgatcccg
cgcaccctgaatatggcgatgagcggcatgcgcgatctgtcgattattgccaccccgccg
gcgcgccgtctggcggtgaaaacctttgttcgcgagtacgacaatctggtggttcgcgag
gcgatcctacgtgaagtgctgcgcggcggccaggtatattacctgtataacgacgttgaa
aacattcagaaagccgccgacaggctggcagagctggtgccggaagcgcgcatcgccatt
ggtcacggccagatgcgcgagcgcgagctggagcgggtgatgaacgacttccaccatcag
cgtttcaacgtgctggtatgtaccaccatcattgagaccgggatcgacattccgacggcg
aacaccatcatcatcgaacgcgcggatcacttcggcctggcccagctgcatcagctgcgc
gggcgcgtcgggcgttcgcaccatcaggcctacgcgtggctgctgacgccgcatccgaag
gcgatgaccaccgacgcgcaaaagcgtctggaagctatcgcctcgctggaagatctgggt
gctggttttgcgctggcgacgcacgacctggagatccgcggcgccggtgagttgttgggt
gaagaccagagcggctccatggaaaccatcggtttttctctgtatatggagctgctggaa
aatgccgtcgacgcgcttaaagccggacgtgaaccgtctctggaagatctcaccagccag
cagaccgaagtggaactgcgcatgccttccctgttgccggatgattttattcctgacgtg
aatacccgtctgtcgttctacaaacgcattgccagcgcgaaacgcgaaggcgagctggaa
gagattaaagtcgaactgattgaccgttttgggatattgcccgatgcggcgcgcaacctg
ctggatattgcccgcctgcgtcagcaggcgcagaagctgggcattcgtaagcttgaaggc
aacgagaaaggcggcgtaattgagtttgccgagaagaaccacgtcgatccgatgtggctg
attggccttctgcaaaaacagccgcagcatttccgtcttgatggcccgacgcgtctgaaa
tttactcaggatctgacggaacgtaaaatccgcatggactgggtgcgtaactttatgcgt
cagttggaagagaacgccatcgcataa
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