Enterocloster clostridioformis: QMP25_34635
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Entry
QMP25_34635 CDS
T10536
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
eclf Enterocloster clostridioformis
Brite
KEGG Orthology (KO) [BR:
eclf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
eclf03009
]
QMP25_34635 (rlmD)
Enzymes [BR:
eclf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QMP25_34635 (rlmD)
Ribosome biogenesis [BR:
eclf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QMP25_34635 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
MTS
Methyltransf_25
Methyltransf_4
Saf-Nte_pilin
PrmA
N6_N4_Mtase
TRM
UPF0020
S-AdoMet_synt_C
Motif
Other DBs
NCBI-ProteinID:
XBX13344
LinkDB
All DBs
Position
6631153..6632679
Genome browser
AA seq
508 aa
AA seq
DB search
MAERMERGMAGKIAGKTAKRMDTGSGTESRKAVDGDKDRAKDSKHKVRDGEGKTGVGKSG
KRFAEDGDALSKQRSGEKRRDGSLPRERKGTDGLSAPKKQDGRGLSAGYRREDSKRGGSY
GGRGTRRCNSICPVLNLCGGCQLLDMEYAKQLDFKQKQVEELLKGLCPVKPIIGMKDPFH
YRNKVHAVFDRDKKGNIISGIYEENTHHVVPVEKCLIENQKADEIIGTIRGMLKSFKIRT
YDEDTGFGLLRHVLIRKGFSTGEIMVVLVTASPVFPSKNNFVKALREKHPEITTIVQNIN
GRGTSMVLGDKEHVLYGKGYIVDELCGCRFRISSKSFYQVNSVQTEILYEKALSLSGLTG
RELVVDAYCGIGTIGIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIDNIRFYCNDAGRF
LMNMAEQGEKADVVIMDPPRSGSTEEFMDAVGKLGAGKVVYVSCNPETLARDVRYMKKLG
YRAVEAWPVDMFPGTVHVETVALLVRKP
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaggatggagagagggatggctggaaaaatagctggaaagacggctaaaaga
atggatacaggttcgggaacagaaagcaggaaagccgtagatggagataaagacagagca
aaggatagtaaacataaggtgagggacggagaaggtaagactggtgtgggtaagagcggg
aaacggtttgcagaagatggggatgctttgtccaaacagcgcagtggagaaaaacgcagg
gatggcagtttgccaagagagcgcaaagggactgatggattgtctgcaccaaaaaaacaa
gatggaaggggattaagtgctggatatcggagagaggattccaaaagaggcggttcatat
gggggacggggaaccagaaggtgcaacagtatctgcccggtgctgaatctgtgcggaggc
tgccagctgctggatatggagtatgctaagcagcttgatttcaaacagaagcaggtagag
gaactgctaaaagggctctgtcctgttaagcctattataggtatgaaggatccatttcat
taccgcaataaggttcatgctgtatttgacagagataaaaaaggaaatatcatttccgga
atatatgaagaaaatacacaccatgtagttcctgtggagaagtgccttatagagaaccag
aaggcggatgaaatcatcggtactatacgcggaatgctcaaatcttttaaaattcggacc
tatgatgaggatacgggctttggacttctcagacatgtcttaatccgcaagggtttttcc
acaggggaaattatggtagtgctggttacggcatctccagtgtttccgtctaagaataac
tttgttaaggctttgcgggagaaacatccggagattaccaccatcgtccagaatattaac
ggaagagggacaagcatggttctgggtgataaggagcatgtgttatatggcaagggatat
attgtggacgaactgtgcggatgccggttccgtatatcgtcaaagtcattttaccaggtg
aattccgtgcagacagaaattctttatgaaaaggcattgtcactgtccggtcttaccggg
cgggaactggtggtggatgcgtactgcggtatcggaaccattggaatcatagcaagtaag
gctgccgggaaggttattggagtggaactgaatcaggatgcggtcagggatgctgttaat
aatgcgaagatgaatggaatagataatattcgtttttattgtaatgacgccggccgtttt
ctgatgaatatggctgaacagggtgagaaagcagatgtggttattatggatcctcccaga
agcggaagtacggaggagtttatggacgccgtaggaaagctgggagccggaaaggtggtg
tatgtgtcgtgtaatccggaaacgctggccagggatgtgaggtatatgaagaagctgggg
tatcgggcggtggaggcttggccggtggatatgtttccggggacggtgcatgttgagaca
gtggcgttgctcgtgcggaaaccttga
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