Enterobacter cloacae GGT036: EC036_04020
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Entry
EC036_04020 CDS
T03429
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eclg
Enterobacter cloacae GGT036
Pathway
eclg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eclg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EC036_04020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eclg03019
]
EC036_04020
03016 Transfer RNA biogenesis [BR:
eclg03016
]
EC036_04020
Enzymes [BR:
eclg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EC036_04020
Messenger RNA biogenesis [BR:
eclg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EC036_04020
Transfer RNA biogenesis [BR:
eclg03016
]
Prokaryotic type
tRNA degradation factors
EC036_04020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AIV28049
UniProt:
A0A421IGV1
LinkDB
All DBs
Position
436173..438614
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AA seq
813 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQTEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPKA
VEEQIVGLKEEVPEESKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESIGDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATREVSDWLKCDFMLDQVGNIFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGGNGNASGKRRQAGKKVNFEPDSAFRGEKKQKPKAA
KKEARKAKKPSAKTQKIAAATKAKRAAKKQQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaacgcgaagctgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gctgttgaattaaacattgaaggtgaagagcaaactgaagcccttcgccgccgcctgcgc
gccatggagcgcgacgggcaactggtctttacccgtcgccagtgctatgcgctgccagaa
cgcctcgacctgttgaaagggaccgtcattggtcaccgcgacggttacggttttttgcgc
gtagagggccgcaaagacgacctctacctctcatccgaacagatgaaaatgtgtattcac
ggcgaccagatcctggcgcagccgctgggtgccgatcgtaaaggccgtcgcgaagcacgc
gtggttcgcgtgctggtgccaaaaaccagccagatcgttggccgctactttaccgatgcc
ggtgtaggctttgtggtaccggatgacagccgtctgagcttcgatatcctgatcccgcct
gaagaggtgatgggcgcgcgcatgggctttgtggtagtagtggagcttacccaacgtcca
acgcgtcgcaccaaagcggtaggtaaaatcgtcgaagtgctgggcgataacatgggtacc
ggcatggctgttgatatggccctgcgtacacatgagatcccctacatctggccaaaagcg
gttgaagagcagattgtgggtctgaaggaagaggttccggaagagtccaaagcgggacgc
gtggatctccgcagtttgccgctggtcaccattgatggtgaagatgcccgcgacttcgat
gacgccgtatactgcgagaaaaaacgcggtggcggctggcgtctgtgggttgctatcgcc
gacgtgagctattacgttcgtccccatacgccgctcgataacgaagcgcgcagccgtggt
acgtcggtttacttcccgtctcaggtggtaccgatgctgccggaagtgctttccaacggc
ctctgttccctgaacccgcaggttgatcgcctgtgtatggtttgcgagatgaccatctcc
agtaaaggtcgcttaaccggttataaattctacgaagcggtaatgagctcccatgcgcgt
ctgacctacaccaaggtctggcatatgctgcagggcgatcaggatctgcgtgaacagtat
gcgccgctggtgaagcacatcgaagagttgcataacctctacaaaacgctggatcaggcg
cgcgaagagcgtggcgggatctcgtttgagagcgaagaggcgaagttcattttcaacgct
gaacgccgcattgagcgtattgaacagacccagcgtaacgatgcgcataagctgatcgaa
gagtgtatgatcctggcgaacatctcggcggcccgttttgtcgagaaagctaaagagccg
gcgctgttccgtatccacgataaaccgtcgacggaagccattaccgcgttccgctccgta
ctggctgaactcggtctggagctgcctggcggtaacaagccagagccgcgcgattatgct
gagctgctggaatccattggcgatcgtccggatgcagaaatgctgcagaccatgctgctg
cgctccatgaagcaggcgatttacgacccggaaaaccgtggtcacttcggtctggcgctg
cagtcttacgcgcactttacatcgccgatccgccgttatccggacctgtctttgcaccgt
gcgatcaagtatctgctggcgcaggagcagggccataaagggaacacgactgaaaccggc
gggtaccactattcaatggaagagatgctgcagcttggccagcactgttccatgaccgaa
cgccgtgccgatgaagcgacgcgcgaagtctctgactggctgaaatgcgactttatgctg
gatcaggtcggtaacattttcaaaggtgttatcgccagcgtgaccgggtttggtttcttt
gttcgccttgacgagctgtttatcgacggtctggtgcatgtctccagcctcgataatgac
tattaccgtttcgaccaggttggacaacgtctgattggtgaatcgggtggacagacctat
cgccttggcgatcgggtggaggtcaaagtcgaagccgtcaacatggacgagcgtaagatt
gacttcagtctgatctccagcgagcgcgcgccacgtaacgtaggtaaaaccgcgcgtgag
aaggcgaaaaaaggcggtaacggcaacgcgagcggcaaacgtcgtcaggcgggtaagaaa
gtgaacttcgagccagacagcgccttccgcggtgagaaaaagcagaagccaaaagcggcg
aagaaagaggctcgcaaggcgaaaaagccgtccgcgaaaacgcagaaaattgctgctgcg
accaaagcgaagcgcgcagcgaagaaacagcaggcggagtaa
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