Enterobacter cloacae ECNIH5: ECNIH5_02300
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Entry
ECNIH5_02300 CDS
T03706
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ecli
Enterobacter cloacae ECNIH5
Pathway
ecli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECNIH5_02300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecli03019
]
ECNIH5_02300
03016 Transfer RNA biogenesis [BR:
ecli03016
]
ECNIH5_02300
Enzymes [BR:
ecli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ECNIH5_02300
Messenger RNA biogenesis [BR:
ecli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECNIH5_02300
Transfer RNA biogenesis [BR:
ecli03016
]
Prokaryotic type
tRNA degradation factors
ECNIH5_02300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AIX57650
LinkDB
All DBs
Position
475423..477864
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEDQIENLREEVPEESKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAVTSFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAHEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTEREKAKKGGNGKAGGKRRQAGKRVNFEPDSAFRGEKQQKPKAA
KKDARKAKKPSTKTQKIAAATKAKRAAKKQQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagccgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaacattgagggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gccatggagcgcgacggccagctggtctttactcgtcgccagtgctacgcgctgccagaa
cgcctcgatctgctgaaaggcaccgttattggtcatcgcgatggcttcggcttcctgcgc
gtggaaggccgtaaagacgacctgtacctctcatccgaacagatgaagatgtgtattcac
ggcgaccagatcctggcgcagccgctgggtgcagatcgtaaaggccgccgcgaagcgcgc
gtggtccgcgtgctggtgccgaaaaccagccagattgtaggccgttactttaccgatgcg
ggcgtaggctttgtggtgccggacgacagccgtctgagcttcgacattctcatcccgcct
gaagaggtgatgggcgcacgcatgggctttgtggtagtggttgaacttacccagcgcccg
acccgccgtaccaaagcggtaggtaaaatcgtcgaagtgctgggcgataacatgggcacc
ggcatggccgttgatatggcgctgcgcacccatgaaattccttacgtctggccgaaagcg
gttgaagaccagatcgaaaacctgcgtgaagaagtgccggaagagtccaaagcaggccgc
gtggatctgcgcgatctgccgctggtcaccattgatggtgaagacgcccgcgacttcgat
gatgccgtgtactgtgagaaaaaacgcggtggtggctggcgtctgtgggtggctatcgcg
gatgtgagttattacgtacgtccacacacgccgctggataacgaagcgcgcagccgcggt
acgtcggtctacttcccgtcgcaggttgtaccgatgctgccagaagtgctctcgaacggc
ctgtgttccctcaacccgcaggtggaccgcctgtgtatggtctgcgaaatgaccatctcc
agcaagggacgtctgacgggctataagttctacgaagcggtgatgagttctcatgcgcgc
ctgacctataccaaggtctggcatatgttgcagggcgatcaggatcttcgcgaacagtac
gcgccgctggtcaaacacatcgaagagctgcacaacctatacaaaacgctggatcaggcg
cgcgaagagcgcggtgggatctcgtttgagagtgaagaggcgaaattcatctttaacgct
gagcgtcgtatcgagcgaatcgagcagactcagcgtaacgatgcgcacaagctgattgaa
gagtgtatgatcctggcgaacatctcggcggcacgtttcgttgagaaagccaaagagcct
gctctgttccgtattcacgataagccaaccacggaagccgtaacctcgttccgttccgtg
ctggctgaactcggcctggaactgcctggcggcaataagcctgagccacgcgattatgcc
gagctgctggaatccatcagcgatcgtcctgacgcggaaatgctgcaaaccatgctgctg
cgttccatgaagcaggcgatttacgatccggaaaaccgaggccactttggtctggcgtta
cagtcgtatgcgcactttacctcgccgattcgccgttatccggatctgtccctgcaccgt
gcgatcaagtatctgctggcgcacgagcaaggtcacaaaggcaatacgaccgaaaccggt
gggtatcactactccatggaagagatgctgcaactgggccagcactgttccatgaccgag
cgtcgtgcggatgaagcaacgcgcgacgtggcggactggctgaagtgtgactttatgctg
gatcaggtgggtaacgtctttaaaggtgtgattgccagcgtcaccggctttggcttcttc
gtacgtctggatgagctgtttatcgacggtctggtgcacgtttccagccttgataacgat
tactaccgcttcgaccaggtcggacaacgtctgatcggtgaatccggcggtcagacctac
cgtctgggcgatcgggtggaagtgaaggtagaagccgtgaatatggacgaccgtaaaatc
gacttcagcctcatctccagcgaacgggctccgcgtaacgtcgggaaaaccgagcgtgag
aaagcgaaaaaaggtggcaacggtaaagcgggcggcaagcgacgtcaggcaggtaaaaga
gtaaactttgagccagacagcgccttccgtggcgagaagcagcagaagcccaaggcggcg
aaaaaagacgctcgtaaagcgaaaaaaccgtcgaccaagacccaaaaaatagcggccgca
accaaagcgaagcgcgcggcgaagaaacagcaggcggagtaa
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