Enterobacter cloacae ECNIH4: ECNIH4_12135
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Entry
ECNIH4_12135 CDS
T03486
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecln
Enterobacter cloacae ECNIH4
Brite
KEGG Orthology (KO) [BR:
ecln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecln03019
]
ECNIH4_12135
Enzymes [BR:
ecln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECNIH4_12135
Messenger RNA biogenesis [BR:
ecln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECNIH4_12135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
T2SSE
nSTAND3
nSTAND_NTPase5
NACHT
ResIII
DUF6145
AAA_16
SLFN-g3_helicase
NTPase_1
PhoH
Motif
Other DBs
NCBI-ProteinID:
AIX54956
LinkDB
All DBs
Position
complement(2559643..2563545)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEHQKITFPMLLQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGK
VVLREAARPAITYPEKLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGNESAGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQPHGGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERAQGAVMATE
KVTVYGLPVVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDEALFEFYDQRISHDVISARHFDSWWKKASKETPDLLNFEKSMLIKEGA
ESVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPMRRNFVPAPNYAEAFLGRVTPLELPLLDALEREFRRMTGTTIDREDW
NWEQVPDHLKISFRVVDDKNKKLLEGRSLSELKEALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQMMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWTEEGFAQLHEK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDVKAQMAGLVYRGFVTG
NGFNRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESVQQAWQQWLNKLLPARRDDED
VQAIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaccaaaaaatcaccttcccgatgctcttgcaaaggcttgatgccctgatg
ctgcgcgataaacagcggtttgcgcgtcgtctgcacggtgtgaagaaggttaaaaatcct
gatgcacaacaggccatttatcaggagatggcgaaagagattgaacaggcagcagggaaa
gttgtgctgcgcgaagctgcacgtccggcaattacctacccggaaaagctgcctgtcagt
cagaaaaaacaggacatcctggaagccgtgcgcgaccaccaggtggtaattgtcgcaggg
gaaaccggttcggggaaaaccacccagttgccgaaaatctgcatggagctggggcgcggg
gtgaaaggtctgattggccacacccagccgcgtcgtctggcggcgcgtaccgtggcgaac
cgtattgccgaagagctgcaaaccgagccgggcggctgcatcggttacaaggtgcgattc
agcgaccacgtcagcgataacaccatggtcaagctgatgactgacggtatcctgctggcg
gaaatccagcaggatcgcctgctgatgcagtacgacaccatcatcatcgacgaagcacac
gagcgcagcctgaacattgacttcctgctcggttacctgaaagaactgctgccgcgtcgt
ccggatctgaaaatcatcatcacctccgcgaccatcgacccggagcgcttctcgaagcat
ttcaacaatgcgccgataattgaagtgtcaggacgcacgtacccggtggaagtgcgctat
cgcccgattgtcgaagaggcggatgataccgagcgcgaccagctccaggccatcttcgac
gctgtcgacgaactgggcaacgaaagtgcgggcgacattctgatctttatgagcggcgag
cgcgaaattcgcgataccgccgatgcgctcagcaagcgcgatctgcgtcatacggagatc
ctgcccctgtacgcgcgcctgtcgaacagcgagcagaaccgcgtgttccagccgcacggc
ggacgccgcattgtgctggcgaccaacgtggcggaaacctcgctgaccgtaccggggatc
aaatacgtaatcgacccgggcacagcgcgtatcagccgctacagctaccgcaccaaggtg
caacgcctgccaatagagccggtttctcaggcgtcggccaaccagcgtaaaggccgctgc
ggtcgtgtgtcggaagggatctgtattcgtctctattccgaagacgatttcctgtcgcgc
ccggagtttaccgacccggaaattctgcgcaccaacctggcgtccgttatcctgcagatg
accgccctggggctgggcgacatcgcggcgttcccgttcgtggaagcgccggacaaacgc
aacattcaggatggtgtccgtctgctggaagagttgggggccattaccaccgacgagcag
gcgacggtctataaactgacgccgttgggtcgtcagcttagccagttgccggtcgacccg
cgtctggcgcgcatggtgctggaagcccagaagcacggctgcgtgcgcgaggcgatgatt
atcacctctgcgctctccattcaggatccgcgcgagcgtccgatggataaacagcaggcg
tcagatgaaaaacaccgtcgcttccacgacaaagagtccgatttcctcgccttcgtgaac
ctgtggaactatctcggcgagcagcagaaagcgctctcctcgaaccagttccgccgccag
tgccgcgtggatttcctcaactacctgcgcgtgcgcgagtggcaggatatctacacccag
ctgcgccaggtggtgaaagagctgggcattccggtgaacagtgagcctgcggagtaccgt
gaaattcatatcgcgctgctgaccggcctgctctcccacattgggatgaaggacgcagag
aagcaggaatataccggcgcgcgcaatgcccgtttctccatcttccccggttccggctta
ttcaagaagccgccgaagtggaccatggtggccgagctggtggaaaccagccgcctgtgg
ggacgcattgccgcgcggatcgacccggaatgggttgagccagtcgcgcagcatctgctg
aaacgctcatacagtgaaccacactgggagcgtgcgcagggggcagtgatggcgaccgag
aaggttaccgtttatggcctgccggtggtggccgcgcgtaaggtcaactacagccagatt
gacccggcgctcagccgcgagctgtttatccgccacgcgctggtggagggcgactggcag
acgcgccatgcgttcttccgcgaaaacctgaagctgcgcgccgaggtggaagagcttgag
cataaatcccgccgtcgcgacatcctggtagatgacgaggcgctgttcgaattttacgat
cagcgcatcagtcacgatgtgatttccgcccgccactttgacagctggtggaagaaggcc
agtaaagagacgccggacctgctcaattttgaaaagagcatgttgattaaagagggggcg
gagtcggtcagcaagctcgactacccgaacttctggcatcagggcaatctcaagctgcgt
ctgacctatcagtttgaaccgggggccgatgcggacggcgtgaccgtccacattccgctg
ccgctgttaaaccaggtcgacgagagcgggtttgaatggcagatccccggcctgcgccgc
gagctggtcattgcgctgattaaatcgctgccgaaaccgatgcggcgtaattttgtgcct
gcgccgaactacgcggaagcgtttttgggccgcgtcacgccgctggagctgccgctgctg
gacgcgctggagcgagaattccgccgcatgacaggcaccaccattgaccgcgaagactgg
aactgggaacaggtacccgatcacctgaaaatcagcttccgcgtggtggatgataaaaac
aaaaagctgctggaagggcgttccctgagcgagctaaaagaggcgctgaaggggaaagtc
caggagacgctctctgcggtggcggacgacggtatcgagcagagcgggctgcatatctgg
agttttggtcagcttccggaaagctacgagcaaaaacgcggtaactataaggtgaaagcc
tggccagcgctggtggacgagcgcgacagcgtggcgatcaagctgtttgataacccgcag
gaacagcagcagatgatgtggcgcgggctgcgtcgcctgctgctgctgaacattccgtcg
ccgattaaatatctgcacgagaagttgccgaacaaggccaagctgggtctgtactttaac
ccgtacggcaaagtgctggatctaattgacgactgcatctcctgcggcgtggacaaactg
atccacgaggcgggcggtccggtctggacggaagagggctttgctcagcttcatgaaaag
gtccgcgcggagctcaacgacaccgtggtggagattgccaaacaggtcgagcagatcctc
accgccgtgttcaacatcaacaagcgcctgaaggggcgcgtggatatgaccatggcgctg
gggctgtcggacgtgaaggcgcagatggcggggctggtgtatcgtggctttgtcaccggc
aacggcttcaaccgtctcggcgatacgctgcgctatctgcaggcaattgaaaaacgtctg
gagaaaatggccatcgacccgcaccgcgatcgcgcgcagatgttgaaagtggaaagcgtg
cagcaggcgtggcagcagtggctgaacaagctgctgccggcgcgccgcgacgatgaagac
gtgcaggcgatccgctggatgatcgaggagctacgcgtcagcttctttgcccagcagctc
ggtacgccgtatccgatttcggataagcgtattttgcaggcgatggagcagatctctggc
taa
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