Enterobacter cloacae ECNIH4: ECNIH4_13970
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Entry
ECNIH4_13970 CDS
T03486
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecln
Enterobacter cloacae ECNIH4
Pathway
ecln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECNIH4_13970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecln03400
]
ECNIH4_13970
Enzymes [BR:
ecln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECNIH4_13970
DNA repair and recombination proteins [BR:
ecln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECNIH4_13970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIX55307
UniProt:
A0A6S5JV97
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All DBs
Position
2927914..2931360
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRIQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRIQRLSDAAG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQYFRLDGPTRLKFTQELADRKTRMDWVRNFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagttgggt
gaacttacgggcgcggcgtgcgccacgctggtggcagaaattgctgagcgacaccccggc
ccggtggtgcttgttgccccggatatgcaaaatgccctgcgcctgcacgacgaaatccgc
cagttcaccgatagcctggtgttcagcctggccgactgggaaacgctgccgtatgacagc
ttctctccgcatcaggagatcatctcctcgcgcctgtcgacgctctaccagttgccgacc
atgcagcgcggtgtgctgattgtgccggtaaataccctgatgcagcgcgtctgtccgcac
agctatctgcatggtcatgcgctggtgatgaaaaaaggccagcgcctgtcccgtgatgcc
ctgcgcgagcagcttgacggtgccggctatcgtcatgtcgatcaggtgatggagcacggg
gaatacgcaacccgtggcgcgttgcttgacctttatcccatgggcagcgaccagccgtat
cgtctcgatttcttcgatgatgaaatcgacagcctgcgcgtgttcgacgccgacacccag
cgcacgctagaggaagtagagtccattaacttactgcccgcgcatgaattcccgacggac
aaaactgccatcgaactgttccgcagccagtggcgcgataagttcgacgtcaagcgtgat
gccgagcacatctatcagcaggtcagcaaaggcacgctcccggccgggatcgaatactgg
cagccgttgttctttaacgagccgctgcctgccctgttcagctacttcccggcaaatacg
ctgattgtgaacaccggcgatatcgacgccagcgccagccgtttcgaaagcgaaacccgc
gcccgcttcgaaaatcggggcgttgacccgatgcgtccgctgctgccgccggaagcgctg
tggctgcgtaccgacgaactcaatgcggagctgaagcgctggccgcggatccagctcaaa
accgattcgcttgccgataaggccgccaacaccaacctcgccttccggacgctgccggac
ctggccgttcaggcgcagcagaaatcgccgctggataatctgcgcaagttcctggagtcc
tttaccggcccggtggtgttctccgttgagagtgaaggccgccgcgaagcactcggcgag
ctgctgggtcgaataaaagttgcgccgaaacgcattcagcgcctgagcgacgcggccgga
aacggccgttatctgatgattggtgccgccgaacacgggtttattgatacgctcaacaac
ctggcgctgatttgcgaaagcgatctgctgggtgagcgcgtcgcgcggcgccgtcaggac
agccgtcgaaccattaacccggacacgctgatccgtaacctggccgaactgcatccgggc
cagccgattgttcacctggagcatggcgttgggcgctatcagggaatgaccacgctggaa
gccggcggcatcaaaggtgaatacctgatgctgacctacgccaacgacgccaaactgtat
gttccggtgtcatccctgcatctgatcagccgatacgcgggtggcgcggaggataacgcc
ccgctgcacaaactgggcggcgatgcctgggctcgcgcgcgccagaaagcggcggagaaa
gtacgcgacgtggcggccgagctgctggatatctacgcccagcgcgcggccaaagagggc
ttcgcctttaagcatgataaagagcagtaccagctgttctgcgacagcttcccgtttgaa
accacgccggatcaggcccaggccatcaacgccgtattgagcgacatgtgccagccgctg
gcgatggaccgcttagtctgcggcgacgtcggcttcggcaaaaccgaagtggcgatgcgc
gccgccttcctggcggttgaaaacaacaagcaggtggcggtgctggtgccgaccaccctg
ctcgcccagcagcacttcgacaacttccgcgaccgtttcgccaactggccggtgcgcatt
gagatgctgtcacgttttcgcagcaccaaagagcagacgcagatcctcgaacaggcaagc
gaaggcaaaatcgatattctgatcggtacgcacaagctgttgcaaagcgacgtgaagtgg
aaagatctggggctgctgatcgtcgacgaagagcaccgcttcggggtgcgtcacaaagag
cggatcaaagcgatgcgcgccgacgtcgatattctgaccctgaccgcaacgccaattccg
cgtacgctgaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacaccaccg
gcgcgtcgtctggcggtgaaaacctttgtccgcgagtacgataatctggtggtacgcgag
gcgatcctgcgtgaggtactgcgcgggggccaggtttattatctttataacgacgttgaa
aatatccagaaagccgcggacaggctggccgaactggtaccggaagcgcgtattgccatc
ggccacgggcagatgcgcgagcgcgagctggagcgggtgatgaacgacttccaccaccag
cgctttaacgtactggtgtgtaccaccatcattgaaaccggcattgatatcccgacggcg
aataccatcattattgagcgtgcggatcactttggtctggcgcagcttcatcagctgcgc
ggtcgcgtcggacgttcgcatcatcaggcttacgcctggctgttgaccccgcatccgaaa
gcgatgaccaccgacgcgcaaaagcgtctggaagccatcgcctcgctggaagacctcggt
gcaggctttgcgctggccacgcacgatcttgagatccgtggtgccggcgaactgctgggc
gaggatcagagcggctccatggaaaccatcggcttctcgctctatatggagctgctggaa
aacgcggttgatgccctgaaggccggacgcgagccgtcgctggaagatctcaccagccag
cagaccgaggtcgagttgcgtatgccgtccctgctgccggatgatttcattcctgatgtg
aatacccgcctgtcattctacaaacgcattgccagcgcgaagaatgaaaatgagctggaa
gagatcaaagtggaactgattgaccgctttggcctgctgcccgatgcggcgagaaatctg
ctggatatcgcgcggctgcgccagcaggcgcagaagctggggatccgcaaacttgaaggt
aatgaaaaaggcggcgtcattgaattcgccgagaagaaccacgtcaacccgatgtggctg
attggcctgctgcaaaaacagccgcagtatttccgcctggatgggccaacccgtctgaaa
tttacccaggagctggcggatcgcaaaacccgtatggactgggtgcgtaactttatgcgg
cagctcgaagagaacgcggtcgcgtaa
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