Enterobacter cloacae ECNIH4: ECNIH4_14145
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Entry
ECNIH4_14145 CDS
T03486
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ecln
Enterobacter cloacae ECNIH4
Pathway
ecln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECNIH4_14145 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecln03019
]
ECNIH4_14145 (rne)
03009 Ribosome biogenesis [BR:
ecln03009
]
ECNIH4_14145 (rne)
Enzymes [BR:
ecln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ECNIH4_14145 (rne)
Messenger RNA biogenesis [BR:
ecln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECNIH4_14145 (rne)
Ribosome biogenesis [BR:
ecln03009
]
Prokaryotic type
rRNA processing factors
ECNIH4_14145 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIX55340
UniProt:
A0A6S5JQT3
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All DBs
Position
2963391..2966507
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAYNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMQ
TPHYHVLRVRKGEETTTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
AALEKPVTKPVVQKPEAAAPKAQPAQPGLLSRFFGALKKMFAGEEVQPEQPKEEPKAAKP
ERQQDRRKRQNNRRDRNDRNDRNDRNDRRDNRSDNSEGREQREDNRRNRREKQQQNVEDR
EIRQQAGDESEKGKQRDDQQPRRERSRRRNDEKRQAQQEVKNLNREEPVEQQDGEQEERT
QVMPRRKQRQLTQKVRIGAPQAEETAAVAAEVPEAATGTQIAKVDLPAVVENHVEQDENG
ENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRY
PVARPEQAVEEQAVTEEVIAPVAAVEEVVTEAATVVEPQAVETAEPQAVEVETTHPEVIA
APVEAAPQLIAEEDVVVAKDVAEEAEPVAAVEETAEAIVETTAEDVVQDVEIQVEPVVED
VKAPEVEPEPVKIVAAPAPVHVATAPMTRAPAPDYVPEAPRHSDWVRPEFNFEGKGAAGG
HSATHKATAPATRPQSVE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaacccagccttgaagctgcatttgttgattac
ggtgctgagcgtcatggtttcctccctctgaaagaaatcgcccgcgaatatttccctgcc
aactacaacgcccatggccgcccaaacatcaaagatgttctgcgtgaaggtcaggaagtt
atcgtccagattgataaagaagagcgtggcaacaaaggtgctgcactgactacctttatt
agcctggcagggagctatctggtgctgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagccttgagctg
ccggatggcatggggcttatcgtgcgtaccgcaggcgtgggcaaatctgccgaagcgctg
cagtgggacttaagcttccgtctgaagcactgggaagctatccagaaagctgcagaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgtgac
tacctgcgtcaggacatcggtgaaatcctgatcgacaacccaaaagtgcttgaactggct
cgccagcacatcgccgcactgggtcgtccggatttcaccagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactatcagattgaatcccagattgagtccgccttccag
cgtgaagtgcgtctgccttccggcggttctatcgttatcgataccactgaagcgctgacc
gctatcgacatcaactccgcacgtgccacacgcggcggtgacatcgaagagaccgcctac
aacactaacctcgaagccgctgatgaaatcgcccgccagctccgcctgcgcgatctgggt
ggtctgattgttatcgacttcatcgacatgacccctgtacgccaccagcgtgcggttgaa
aaccgtctgcgcgaagcggtgcgtcaggacagggcgcgtatccagattagccatatctca
cgctttggcctgctggagatgtctcgtcagcgtctgagcccgtctctcggcgagtccagc
catcacgtttgtccgcgctgctccggcaccggtaccgtgcgtgataacgaatctctgtcc
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccattgtgccggtgcccgttgcctcttacctgcttaacgaaaaacgtgcagcggtaagt
gctatcgaagcacgtcagggcggcgttcgctgcatcatcgtgccaaacgaccagatgcag
accccacactatcacgtgctgcgcgtgcgtaagggcgaagagacgaccactctcagctac
ctgctgccgaagctgcacgaagaagagatggcgctgccttccgatgaggaacccgccgag
cgcaaactgccagagcagcctgcgttagccacttttattatgccagaagcaccgccagaa
gcggccctggaaaaaccggtcactaaacctgtcgtgcagaaaccagaagccgcggcaccg
aaagcccagccggcgcaaccgggtctgctgagccgcttcttcggcgcgctgaaaaagatg
tttgcgggtgaagaagtccagccagagcagccgaaagaagaaccaaaagcggctaaacct
gagcgtcagcaggatcgtcgtaaacgtcagaacaaccgccgcgatcgtaatgaccgcaac
gaccgtaacgatcgtaacgaccgtcgtgacaaccgttcagacaacagcgaaggccgcgag
caacgcgaagacaaccgtcgcaaccgtcgcgagaaacaacagcagaacgttgaagatcgt
gaaattcgccagcaggcgggcgatgagtctgagaagggcaaacagcgtgacgaccagcag
ccacgtcgcgaacgtagccgtcgtcgtaacgacgagaaacgtcaggcgcagcaggaagtc
aaaaatctgaaccgcgaagagcctgtagagcagcaggacggcgagcaggaagaacgtact
caggttatgccacgtcgtaagcagcgccagctgacgcagaaagtgcgcattggtgctcct
caggcagaagaaactgcagctgtagcggctgaagtaccggaagccgcaacgggtacgcag
attgcaaaagttgatctgccagccgttgtggaaaatcacgttgagcaggatgagaatggg
gaaaaccgtgacaacgcaggcatgccgcgccgttcacgtcgttctccgcgtcatctgcgc
gtcagcggccagcgtcgtcgtcgttaccgtgacgagcgttacccgactcagtctccaatg
ccgttgaccgtcgcgtgcgcgtcacctgaaatggcatccggcaaagtctggatccgttac
ccggttgctcgcccggagcaggctgttgaagaacaggctgtgaccgaagaggtgattgca
cctgtcgccgcggttgaagaggtcgtgactgaagccgcaaccgtggttgagcctcaggct
gttgaaacagcagaacctcaggctgtagaagtcgaaaccacgcaccctgaagtgattgcc
gcgccggttgaagccgctccacagctgattgctgaagaagatgtcgtggtcgctaaggac
gtcgctgaagaggctgaacctgtagccgcagtggaagagaccgctgaagccatcgtcgaa
accaccgctgaagacgttgttcaggacgttgagattcaggttgaaccggttgtcgaagac
gtgaaagcgcctgaagtggagccagagccggttaagattgtcgccgcgcctgcgccagtt
cacgttgcaacagcgccgatgacacgtgctccggcaccggattatgtgcctgaagcaccg
cgtcacagcgactgggttcgcccggaattcaacttcgaaggtaaaggtgcagccggtggt
cacagtgctacgcacaaggctactgcaccagccacccgtccgcagtctgttgaataa
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integrated database retrieval system
